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authorzsloan2022-08-31 19:15:03 +0000
committerzsloan2022-08-31 19:15:03 +0000
commit72c01fe48285725b24b76d7c6e82eee3148ad59e (patch)
tree485337073e3f72502ce9612c42d4b3aa659dc0a0
parent58fc24b17e2f3dc326e7e764df0c31c53292b9e1 (diff)
downloadgenenetwork2-72c01fe48285725b24b76d7c6e82eee3148ad59e.tar.gz
Move normf function out of quantile_normalize_vals so it can be imported by mapping api
-rw-r--r--wqflask/wqflask/show_trait/show_trait.py22
1 files changed, 11 insertions, 11 deletions
diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py
index d9821d9c..c1d9ad84 100644
--- a/wqflask/wqflask/show_trait/show_trait.py
+++ b/wqflask/wqflask/show_trait/show_trait.py
@@ -550,21 +550,21 @@ def get_max_digits(trait_vals):
return max_digits
-def quantile_normalize_vals(sample_groups, trait_vals):
- def normf(trait_vals):
- ranked_vals = ss.rankdata(trait_vals)
- p_list = []
- for i, val in enumerate(trait_vals):
- p_list.append(((i + 1) - 0.5) / len(trait_vals))
+def normf(trait_vals):
+ ranked_vals = ss.rankdata(trait_vals)
+ p_list = []
+ for i, val in enumerate(trait_vals):
+ p_list.append(((i + 1) - 0.5) / len(trait_vals))
- z = ss.norm.ppf(p_list)
+ z = ss.norm.ppf(p_list)
- normed_vals = []
- for rank in ranked_vals:
- normed_vals.append("%0.3f" % z[int(rank) - 1])
+ normed_vals = []
+ for rank in ranked_vals:
+ normed_vals.append("%0.3f" % z[int(rank) - 1])
- return normed_vals
+ return normed_vals
+def quantile_normalize_vals(sample_groups, trait_vals):
qnorm_by_group = []
for i, sample_type in enumerate(sample_groups):
qnorm_vals = normf(trait_vals[i])