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author | zsloan | 2021-03-30 17:14:46 +0000 |
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committer | zsloan | 2021-03-30 17:14:46 +0000 |
commit | 6a5576bb1271060c703871aedf16360847c68f8b (patch) | |
tree | 21fc08046927f2ba35417655a23cfdd0988cd776 | |
parent | 0a6b9ec767a12bedeb892f400e6b04bbd6160673 (diff) | |
download | genenetwork2-6a5576bb1271060c703871aedf16360847c68f8b.tar.gz |
Shifted the 'try' in a try/except up some to account for a possible error with calculating PCA that I don't know the cause of yet
-rw-r--r-- | wqflask/wqflask/correlation_matrix/show_corr_matrix.py | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py index a77877d2..a67ea9f4 100644 --- a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py +++ b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py @@ -150,14 +150,14 @@ class CorrelationMatrix(object): this_trait_vals.append(sample_value) self.trait_data_array.append(this_trait_vals) - corr_result_eigen = np.linalg.eig(np.array(self.pca_corr_results)) - corr_eigen_value, corr_eigen_vectors = sortEigenVectors(corr_result_eigen) + try: + corr_result_eigen = np.linalg.eig(np.array(self.pca_corr_results)) + corr_eigen_value, corr_eigen_vectors = sortEigenVectors(corr_result_eigen) - groups = [] - for sample in self.all_sample_list: - groups.append(1) + groups = [] + for sample in self.all_sample_list: + groups.append(1) - try: if self.do_PCA == True: self.pca_works = "True" self.pca_trait_ids = [] |