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| author | zsloan | 2021-02-01 11:46:55 -0600 |
|---|---|---|
| committer | zsloan | 2021-02-01 11:46:55 -0600 |
| commit | 4bd2a3ac8ee7efba0bfb134a3dc9e12b695e15d6 (patch) | |
| tree | 7da4b3772aef56f5079bc82e7b970988896d8bb0 | |
| parent | 0e48ed730817937a7dec6967eb6effdfb1382cf1 (diff) | |
| download | genenetwork2-4bd2a3ac8ee7efba0bfb134a3dc9e12b695e15d6.tar.gz | |
Randomized phenotype input file for GEMMA instead of just using the group and trait name
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index ab3a7278..7777735d 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -21,7 +21,7 @@ def run_gemma(this_trait, this_dataset, samples, vals, covariates, use_loco, maf genofile_name = this_dataset.group.name if first_run: - trait_filename = str(this_trait.name) + "_" + str(this_dataset.name) + "_pheno" + trait_filename = str(this_dataset.group.name) + "_" + str(this_trait.name) + "_" + ''.join(random.choice(string.ascii_uppercase + string.digits) for _ in range(6)) gen_pheno_txt_file(this_dataset, genofile_name, vals, trait_filename) if not os.path.isfile("{}{}_output.assoc.txt".format(webqtlConfig.GENERATED_IMAGE_DIR, genofile_name)): |