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| author | zsloan | 2022-08-12 14:43:54 +0000 |
|---|---|---|
| committer | zsloan | 2022-12-21 13:04:07 -0600 |
| commit | fe74f5a07bd99cc8f5f80d45075a24d9475c1ef8 (patch) | |
| tree | e0631253b9577e3044649065c36ba1377a5aff95 | |
| parent | 2f3a7be180ae62bd3417055a96801b66909e14ab (diff) | |
| download | genenetwork2-fe74f5a07bd99cc8f5f80d45075a24d9475c1ef8.tar.gz | |
Replace a couple other instances of hg38 with query
| -rw-r--r-- | wqflask/wqflask/marker_regression/display_mapping_results.py | 10 |
1 files changed, 3 insertions, 7 deletions
diff --git a/wqflask/wqflask/marker_regression/display_mapping_results.py b/wqflask/wqflask/marker_regression/display_mapping_results.py index 434db19d..9425e1f3 100644 --- a/wqflask/wqflask/marker_regression/display_mapping_results.py +++ b/wqflask/wqflask/marker_regression/display_mapping_results.py @@ -1381,17 +1381,13 @@ class DisplayMappingResults: elif (geneStartPix < xLeftOffset): geneStartPix = xLeftOffset # clip the first in-range gene - # color the gene based on SNP density - # found earlier, needs to be recomputed as snps are added - # always apply colors now, even if SNP Track not checked - Zach 11/24/2010 - myColor = BLACK outlineColor = myColor fillColor = myColor - TITLE = f"hg38: Chr {hg38_chr} from {hg38_start:.3f} to {hg38_end:.3f} Mb" - HREF = f"http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr{hg38_chr}:{int(hg38_start * 1000000)}-{int(hg38_end * 1000000)}" + TITLE = f"hg38: Chr {query_chr} from {query_start:.3f} to {query_end:.3f} Mb" + HREF = f"http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr{query_chr}:{int(query_start * 1000000)}-{int(query_end * 1000000)}" # Draw Genes geneYLocation = yPaddingTop + \ @@ -1422,7 +1418,7 @@ class DisplayMappingResults: for xCoord in range(0, genePixRange): if (xCoord % self.EACH_GENE_ARROW_SPACING == 0 and xCoord + self.EACH_GENE_ARROW_SPACING < geneEndPix - geneStartPix) or xCoord == 0: - if hg38_strand == "+": + if query_strand == "+": im_drawer.line( xy=((geneStartPix + xCoord, geneYLocation), (geneStartPix + xCoord + self.EACH_GENE_ARROW_WIDTH, |