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| author | zsloan | 2022-11-28 21:03:46 +0000 |
|---|---|---|
| committer | zsloan | 2022-11-28 21:03:46 +0000 |
| commit | e19ad95d90c9a56935731fb3f4cb371b9a262ab7 (patch) | |
| tree | 1459a8fa2c6afdb72b84791bc0affc7e809d8902 | |
| parent | bc9b4c3e48df84b33b0ecc85258d1043f3d12f72 (diff) | |
| download | genenetwork2-e19ad95d90c9a56935731fb3f4cb371b9a262ab7.tar.gz | |
Fix bug where single chromosome mapping view wouldn't work for the X chromosome
| -rw-r--r-- | wqflask/wqflask/interval_analyst/GeneUtil.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/marker_regression/display_mapping_results.py | 4 |
2 files changed, 3 insertions, 3 deletions
diff --git a/wqflask/wqflask/interval_analyst/GeneUtil.py b/wqflask/wqflask/interval_analyst/GeneUtil.py index 1f9f329b..7a69126c 100644 --- a/wqflask/wqflask/interval_analyst/GeneUtil.py +++ b/wqflask/wqflask/interval_analyst/GeneUtil.py @@ -67,7 +67,7 @@ def loadGenes(chrName, diffCol, startMb, endMb, species='mouse'): if diffCol and species == 'mouse': cursor.execute( "SELECT count(*) FROM BXDSnpPosition " - "WHERE Chr = '%s' AND " + "WHERE Chr = %s AND " "Mb >= %s AND Mb < %s " "AND StrainId1 = %s AND StrainId2 = %s", (chrName, f"{newdict['TxStart']:2.6f}", diff --git a/wqflask/wqflask/marker_regression/display_mapping_results.py b/wqflask/wqflask/marker_regression/display_mapping_results.py index dfd4bd87..eeff807c 100644 --- a/wqflask/wqflask/marker_regression/display_mapping_results.py +++ b/wqflask/wqflask/marker_regression/display_mapping_results.py @@ -560,14 +560,14 @@ class DisplayMappingResults: else: chrName = self.selectedChr self.geneCol = GeneUtil.loadGenes( - chrName, self.diffCol, self.startMb, self.endMb, "mouse") + str(chrName), self.diffCol, self.startMb, self.endMb, "mouse") elif self.dataset.group.species == "rat": if self.selectedChr == 21: chrName = "X" else: chrName = self.selectedChr self.geneCol = GeneUtil.loadGenes( - chrName, self.diffCol, self.startMb, self.endMb, "rat") + str(chrName), self.diffCol, self.startMb, self.endMb, "rat") if self.geneCol and self.intervalAnalystChecked: ####################################################################### |