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authorMuriithi Frederick Muriuki2018-01-19 10:36:19 +0300
committerPjotr Prins2018-03-26 09:24:34 +0000
commit941e42ef72bd6aa6761c35cf78e64df41977c5d3 (patch)
tree1a23d112bb63a6b2f976b2888fd3ef0fa33a469e
parent2524691b03cb629eb79e4d11c8ce8e451a5cd870 (diff)
downloadgenenetwork2-941e42ef72bd6aa6761c35cf78e64df41977c5d3.tar.gz
Add elasticsearch module to the path
* Add some code to set up the path for the python-elasticsearch module.
-rwxr-xr-xbin/genenetwork27
1 files changed, 6 insertions, 1 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2
index 8886e4bc..3fe8baa0 100755
--- a/bin/genenetwork2
+++ b/bin/genenetwork2
@@ -95,6 +95,11 @@ export WQFLASK_OVERRIDES=$overrides # JSON
echo WQFLASK_SETTINGS=$settings
echo WQFLASK_OVERRIDES=$overrides
+if [ -z $ELASTICSEARCH_PROFILE ]; then
+ echo -e "\033[1;33mWARNING: Elastic Search profile has not been set - use ELASTICSEARCH_PROFILE\033[0m";
+else
+ PYTHONPATH="$PYTHONPATH${PYTHONPATH:+:}$ELASTICSEARCH_PROFILE/lib/python2.7/site-packages"
+fi
if [ -z $GN2_PROFILE ] ; then
echo "WARNING: GN2_PROFILE has not been set - you need the environment, so I hope you know what you are doing!"
export GN2_PROFILE=$(dirname $(dirname $(which genenetwork2)))
@@ -108,7 +113,7 @@ if [ -z $GN2_PROFILE ]; then
read -p "PRESS [ENTER] TO CONTINUE..."
else
export PATH=$GN2_PROFILE/bin:$PATH
- export PYTHONPATH=$GN2_PROFILE/lib/python2.7/site-packages
+ export PYTHONPATH="$GN2_PROFILE/lib/python2.7/site-packages${PYTHONPATH:+:}$PYTHONPATH"
export R_LIBS_SITE=$GN2_PROFILE/site-library
export GEM_PATH=$GN2_PROFILE/lib/ruby/gems/2.4.0
export JS_GUIX_PATH=$GN2_PROFILE/share/genenetwork2/javascript