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authorDanny Arends2020-05-06 10:11:53 -0500
committerDanny Arends2020-05-06 10:11:53 -0500
commitab098bd0f298a0461a1c13c075029a2b7278d140 (patch)
treee8e9dbb1c69b06c80104cfb158769ff99fd6a766
parent8c05b01213019735fcf72ffbacf4d02e4f803b07 (diff)
downloadgenenetwork2-ab098bd0f298a0461a1c13c075029a2b7278d140.tar.gz
Disable saving of RData
-rw-r--r--wqflask/wqflask/marker_regression/rqtl_mapping.py6
1 files changed, 3 insertions, 3 deletions
diff --git a/wqflask/wqflask/marker_regression/rqtl_mapping.py b/wqflask/wqflask/marker_regression/rqtl_mapping.py
index a64a9f9a..152bb5be 100644
--- a/wqflask/wqflask/marker_regression/rqtl_mapping.py
+++ b/wqflask/wqflask/marker_regression/rqtl_mapping.py
@@ -66,9 +66,9 @@ def run_rqtl_geno(vals, samples, dataset, method, model, permCheck, num_perm, pe
ro.r('all_covars <- cbind(marker_covars, trait_covars)')
else:
ro.r('all_covars <- marker_covars')
- logger.info("Saving");
- ro.r('save.image(file = "/home/dannya/gn2-danny/cross.RData")')
- logger.info("Saving Done");
+ #logger.info("Saving");
+ #ro.r('save.image(file = "/home/dannya/gn2-danny/cross.RData")')
+ #logger.info("Saving Done");
covars = ro.r['all_covars']
#DEBUG to save the session object to file
#ro.r('save.image(file = "/home/dannya/gn2-danny/all.RData")')