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authorPjotr Prins2016-10-05 06:55:50 +0000
committerPjotr Prins2016-10-05 06:55:50 +0000
commitff48bdbce4b4f5cb4c561b06268fd91d8fe546a4 (patch)
treef8ced2e3dd806b9e3182d8353fc72543b6f24e9c
parent74ae90740b4d0b305199474359056fe4123224b1 (diff)
downloadgenenetwork2-ff48bdbce4b4f5cb4c561b06268fd91d8fe546a4.tar.gz
print statements should be logger
-rw-r--r--wqflask/utility/helper_functions.py12
-rw-r--r--wqflask/wqflask/marker_regression/marker_regression.py2
2 files changed, 8 insertions, 6 deletions
diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py
index 149ee553..377f6b26 100644
--- a/wqflask/utility/helper_functions.py
+++ b/wqflask/utility/helper_functions.py
@@ -5,19 +5,21 @@ from base import data_set
from base.species import TheSpecies
from wqflask import user_manager
+import logging
+logger = logging.getLogger(__name__ )
def get_species_dataset_trait(self, start_vars):
#assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype"
self.dataset = data_set.create_dataset(start_vars['dataset'])
- print("After creating dataset")
+ logger.debug("After creating dataset")
self.species = TheSpecies(dataset=self.dataset)
- print("After creating species")
+ logger.debug("After creating species")
self.this_trait = GeneralTrait(dataset=self.dataset,
name=start_vars['trait_id'],
cellid=None,
get_qtl_info=True)
- print("After creating trait")
+ logger.debug("After creating trait")
#if read_genotype:
#self.dataset.group.read_genotype_file()
@@ -27,7 +29,7 @@ def get_species_dataset_trait(self, start_vars):
def get_trait_db_obs(self, trait_db_list):
if isinstance(trait_db_list, basestring):
trait_db_list = trait_db_list.split(",")
-
+
self.trait_list = []
for trait in trait_db_list:
data, _separator, hmac = trait.rpartition(':')
@@ -38,4 +40,4 @@ def get_trait_db_obs(self, trait_db_list):
trait_ob = GeneralTrait(dataset=dataset_ob,
name=trait_name,
cellid=None)
- self.trait_list.append((trait_ob, dataset_ob)) \ No newline at end of file
+ self.trait_list.append((trait_ob, dataset_ob))
diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py
index f28407b3..324f128c 100644
--- a/wqflask/wqflask/marker_regression/marker_regression.py
+++ b/wqflask/wqflask/marker_regression/marker_regression.py
@@ -814,7 +814,7 @@ class MarkerRegression(object):
timestamp = datetime.datetime.now().isoformat(),
)
- print("After creating params")
+ logger.debug("After creating params")
json_params = json.dumps(params)
Redis.set(key, json_params)