diff options
| author | zsloan | 2020-11-25 13:17:03 -0600 |
|---|---|---|
| committer | zsloan | 2020-11-25 13:17:03 -0600 |
| commit | d1740605ffd36e49b9560e81c0e085c58ef8b688 (patch) | |
| tree | fc5f2eebc2fbe2512a148d26f2ac861a1ce464f1 | |
| parent | a1563aee47a54d5ff4253e1da7e851afe28805c0 (diff) | |
| download | genenetwork2-d1740605ffd36e49b9560e81c0e085c58ef8b688.tar.gz | |
Added actual code for coloring manhattan plot differently to display_mapping_results.py
| -rw-r--r-- | wqflask/wqflask/marker_regression/display_mapping_results.py | 46 |
1 files changed, 43 insertions, 3 deletions
diff --git a/wqflask/wqflask/marker_regression/display_mapping_results.py b/wqflask/wqflask/marker_regression/display_mapping_results.py index 3f6de2b2..87910401 100644 --- a/wqflask/wqflask/marker_regression/display_mapping_results.py +++ b/wqflask/wqflask/marker_regression/display_mapping_results.py @@ -74,6 +74,34 @@ DARKVIOLET = ImageColor.getrgb("darkviolet") MEDIUMPURPLE = ImageColor.getrgb("mediumpurple") # ---- END: Define common colours ---- # +# ZS: List of distinct colors for manhattan plot if user selects "varied" +DISTINCT_COLOR_LIST = [ + ImageColor.getrgb("#FF0000"), + ImageColor.getrgb("#00FF00"), + ImageColor.getrgb("#0000FF"), + ImageColor.getrgb("#FFFF00"), + ImageColor.getrgb("#FF00FF"), + ImageColor.getrgb("#00FFFF"), + ImageColor.getrgb("#000000"), + ImageColor.getrgb("#800000"), + ImageColor.getrgb("#008000"), + ImageColor.getrgb("#000080"), + ImageColor.getrgb("#808000"), + ImageColor.getrgb("#800080"), + ImageColor.getrgb("#008080"), + ImageColor.getrgb("#808080"), + ImageColor.getrgb("#C00000"), + ImageColor.getrgb("#00C000"), + ImageColor.getrgb("#0000C0"), + ImageColor.getrgb("#C0C000"), + ImageColor.getrgb("#C000C0"), + ImageColor.getrgb("#00C0C0"), + ImageColor.getrgb("#C0C0C0"), + ImageColor.getrgb("#400000"), + ImageColor.getrgb("#004000"), + ImageColor.getrgb("#000040"), +] + # ---- FONT FILES ---- # VERDANA_FILE = "./wqflask/static/fonts/verdana.ttf" VERDANA_BOLD_FILE = "./wqflask/static/fonts/verdanab.ttf" @@ -293,6 +321,12 @@ class DisplayMappingResults(object): self.plotScale = "physic" self.manhattan_plot = start_vars['manhattan_plot'] + if self.manhattan_plot: + self.color_scheme = "alternating" + if 'color_scheme' in start_vars: + self.color_scheme = start_vars['color_scheme'] + if self.color_scheme == "single": + self.manhattan_single_color = ImageColor.getrgb("#" + start_vars['manhattan_single_color']) if 'permCheck' in list(start_vars.keys()): self.permChecked = start_vars['permCheck'] @@ -2424,10 +2458,16 @@ class DisplayMappingResults(object): Yc = yZero - qtlresult['lod_score']*LRSHeightThresh/LRS_LOD_Max if self.manhattan_plot == True: - if self.selectedChr == -1 and (previous_chr_as_int % 2 == 1): - point_color = RED + if self.color_scheme == "single": + point_color = self.manhattan_single_color + elif self.color_scheme == "varied": + point_color = DISTINCT_COLOR_LIST[previous_chr_as_int] else: - point_color = BLUE + if self.selectedChr == -1 and (previous_chr_as_int % 2 == 1): + point_color = RED + else: + point_color = BLUE + im_drawer.text( text="5", xy=( |