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| author | zsloan | 2020-12-18 14:39:31 -0600 |
|---|---|---|
| committer | zsloan | 2020-12-18 14:39:31 -0600 |
| commit | 41efd6840f2e1c052dbb77affd6f09fc2e2bcd05 (patch) | |
| tree | 8b679f0b3429f44fa5ec25f08b26c6b6d2c3f0bd | |
| parent | 6d493f7ef57322f226dd310497e4dc7518440cfd (diff) | |
| download | genenetwork2-41efd6840f2e1c052dbb77affd6f09fc2e2bcd05.tar.gz | |
Changed show_corr_results.py to get sample names/values from the JSON sample_vals parameter
| -rw-r--r-- | wqflask/wqflask/correlation/show_corr_results.py | 12 |
1 files changed, 5 insertions, 7 deletions
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index 7d3b9b9f..be983c87 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -87,8 +87,6 @@ class CorrelationResults(object): else: helper_functions.get_species_dataset_trait(self, start_vars) - #self.dataset.group.read_genotype_file() - corr_samples_group = start_vars['corr_samples_group'] self.sample_data = {} @@ -454,13 +452,13 @@ class CorrelationResults(object): if not excluded_samples: excluded_samples = () + sample_val_dict = json.loads(start_vars['sample_vals']) for sample in sample_names: if sample not in excluded_samples: - # print("Looking for",sample,"in",start_vars) - value = start_vars.get('value:' + sample) - if value: - if not value.strip().lower() == 'x': - self.sample_data[str(sample)] = float(value) + value = sample_val_dict[sample] + if not value.strip().lower() == 'x': + self.sample_data[str(sample)] = float(value) + def do_bicor(this_trait_vals, target_trait_vals): r_library = ro.r["library"] # Map the library function |