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| author | BonfaceKilz | 2021-05-11 12:10:37 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2021-05-11 13:24:54 +0300 |
| commit | 75b378f757979af1d6fdaff3f3abde0599c5f744 (patch) | |
| tree | ca5a92c3d37c7663c91c32535afee3141addecae /.github | |
| parent | 4538c0ad693ae94ebda5f0bf39678d776c0c8297 (diff) | |
| download | genenetwork2-75b378f757979af1d6fdaff3f3abde0599c5f744.tar.gz | |
workflows: main.yml: Use mariadb as a service
Diffstat (limited to '.github')
| -rw-r--r-- | .github/workflows/main.yml | 30 |
1 files changed, 13 insertions, 17 deletions
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index b09f2f1d..a2925e08 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -12,16 +12,19 @@ jobs: unittest: runs-on: ubuntu-latest container: bonfacekilz/python3-genenetwork2:00ba1f8 + services: + mysql: + image: mariadb:15.1 + env: + MYSQL_ALLOW_EMPTY_PASSWORD: yes + MYSQL_USER: gn2 + MYSQL_PASSWORD: mysql_password + MYSQL_DATABASE: db_webqtl_s + ports: + - 3306:3306 + options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=5s --health-retries=3 steps: - # First start with mariadb set then checkout. The checkout gives - # the mysqld enough time to start - - name: Set up mariadb - run: | - mysql_install_db --user=mysql --datadir=/usr/local/mysql - # Wait for the mysqld_safe process to start - mysqld_safe --user=mysql --datadir=/usr/local/mysql & - # Use v1 of checkout since v2 fails - name: Checkout Project uses: actions/checkout@v1 @@ -31,17 +34,10 @@ jobs: run: | /gn2-profile/bin/screen -dmLS redisconn /gn2-profile/bin/redis-server - # Redis is required by some of the tests 6379 - - name: Bootstrap tables - run: | - mysql -u root -e "SHOW DATABASES;" - mysql -u root -e "CREATE DATABASE db_webqtl_s;" - mysql -u root -e "CREATE USER 'gn2'@'localhost' IDENTIFIED BY 'mysql_password';" - mysql -u root -e "GRANT ALL PRIVILEGES ON *.* TO 'gn2'@'localhost';FLUSH PRIVILEGES;" - - name: Start Genenetwork as a Background Task run: | - /gn2-profile/bin/screen -dmL bash -c "env GN2_PROFILE=/gn2-profile \ + /gn2-profile/bin/screen -dmLS gn2conn + bash -c "env GN2_PROFILE=/gn2-profile \ TMPDIR=/tmp SERVER_PORT=5004 \ WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \ GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \ |