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| author | Arthur Centeno | 2021-06-15 15:33:59 +0000 |
|---|---|---|
| committer | Arthur Centeno | 2021-06-15 15:33:59 +0000 |
| commit | c1a6ca69f7c48d99b6c5d62e56a445583fd4c08b (patch) | |
| tree | f98fccc44829e3f52e585d6b41a1942aa52bd8b7 /.github/workflows | |
| parent | 7e49c006af9c4f7453c3578a7d4f1fc4d7bdf3ed (diff) | |
| parent | 9e9e0e4d440383f617542e810a1115833eafd7bf (diff) | |
| download | genenetwork2-c1a6ca69f7c48d99b6c5d62e56a445583fd4c08b.tar.gz | |
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into acenteno
Diffstat (limited to '.github/workflows')
| -rw-r--r-- | .github/workflows/main.yml | 19 |
1 files changed, 9 insertions, 10 deletions
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index a36abc0a..f279a7e5 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -11,7 +11,7 @@ on: jobs: unittest: runs-on: ubuntu-latest - container: bonfacekilz/python3-genenetwork2:ad741c1 + container: bonfacekilz/genenetwork2:latest steps: # First start with mariadb set then checkout. The checkout gives @@ -31,7 +31,7 @@ jobs: run: | /gn2-profile/bin/screen -dmLS redisconn /gn2-profile/bin/redis-server - # Redis is required by some of the tests 6379 + # Initialise the tables - name: Bootstrap tables run: | mysql -u root -e "SHOW DATABASES;" @@ -39,28 +39,27 @@ jobs: mysql -u root -e "CREATE USER 'gn2'@'localhost' IDENTIFIED BY 'mysql_password';" mysql -u root -e "GRANT ALL PRIVILEGES ON *.* TO 'gn2'@'localhost';FLUSH PRIVILEGES;" - - name: Run the unit tests + - name: Start Genenetwork as a Background Task run: | - env GN2_PROFILE=/gn2-profile \ + /gn2-profile/bin/screen -dm bash -c "env GN2_PROFILE=/gn2-profile \ TMPDIR=/tmp SERVER_PORT=5004 \ WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \ GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \ - etc/default_settings.py -c -m unittest discover -v + etc/default_settings.py" - - name: Start Genenetwork as a Background Task + - name: Run the unit tests run: | env GN2_PROFILE=/gn2-profile \ TMPDIR=/tmp SERVER_PORT=5004 \ WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \ GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \ - etc/default_settings.py& + etc/default_settings.py -c -m unittest discover -v - name: Test for Broken Links run: | - env GN2_PROFILE=/gn2-profile \ TMPDIR=/tmp\ WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \ GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \ - etc/default_settings.py -c /__w/genenetwork2/genenetwork2/test/requests/links_scraper/genelinks.py - + etc/default_settings.py -c \ + $PWD/test/requests/links_scraper/genelinks.py |