Merge remote-tracking branch 'origin/testing' into feature/add_rqtl_pairscan

1 files changed, 0 insertions, 69 deletions

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
deleted file mode 100644
index 0cf4557f..00000000
--- a/.github/workflows/main.yml
+++ /dev/null
@@ -1,69 +0,0 @@
-name: tests
-
-# Run actions when pushing to the testing branch or when you create a
-# PR against it
-on:
-  push:
-    branches: [ testing ]
-  pull_request:
-    branches: [ testing ]
-
-jobs:
-  unittest:
-    runs-on: ubuntu-latest
-    container: bonfacekilz/genenetwork2:latest
-
-    steps:
-    # First start with mariadb set then checkout. The checkout gives
-    # the mysqld enough time to start
-    - name: Set up mariadb
-      run: |
-        mysql_install_db --user=mysql --datadir=/usr/local/mysql
-        # Wait for the mysqld_safe process to start
-        mysqld_safe --user=mysql --datadir=/usr/local/mysql &
-
-    # Use v1 of checkout since v2 fails
-    - name: Checkout Project
-      uses: actions/checkout@v1
-
-    # Redis is required by some of the tests 6379
-    - name: Start Redis
-      run: |
-        /gn2-profile/bin/screen -dmLS redisconn /gn2-profile/bin/redis-server
-
-    # Initialise the tables
-    - name: Bootstrap tables
-      run: |
-        mysql -u root -e "SHOW DATABASES;"
-        mysql -u root -e "CREATE DATABASE db_webqtl_s;"
-        mysql -u root -e "CREATE USER 'gn2'@'localhost' IDENTIFIED BY 'mysql_password';"
-        mysql -u root -e "GRANT ALL PRIVILEGES ON *.* TO 'gn2'@'localhost';FLUSH PRIVILEGES;"
-
-    - name: Start Genenetwork as a  Background Task
-      run: |
-        /gn2-profile/bin/screen -dm bash -c "env GN2_PROFILE=/gn2-profile \
-        TMPDIR=/tmp SERVER_PORT=5004 \
-        WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
-        GN_PROXY_URL='http://localhost:8080' \
-        GN3_LOCAL_URL='http://localhost:8081' \
-        GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
-        etc/default_settings.py"
-
-    - name: Run the unit tests
-      run: |
-        env GN2_PROFILE=/gn2-profile \
-        TMPDIR=/tmp SERVER_PORT=5004 \
-        WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
-        GN_PROXY_URL='http://localhost:8080' \
-        GN3_LOCAL_URL='http://localhost:8081' \
-        GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
-        etc/default_settings.py -c -m unittest discover -v
-
-    # - name: Test for Broken Links
-    #   run: |
-    #     env GN2_PROFILE=/gn2-profile \
-    #     TMPDIR=/tmp\
-    #     WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
-    #     GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
-    #     etc/default_settings.py -c \
-    #     $PWD/test/requests/links_scraper/genelinks.py