"""

Script that sets default resource access masks for use with the DB proxy

Defaults will be:
Owner - omni_gn
Mask  - Public/non-confidential: { data: "view",
                                   metadata: "view",
                                   admin: "not-admin" }
        Private/confidentia:     { data: "no-access",
                                   metadata: "no-access",
                                   admin: "not-admin" }

To run:
./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py

"""

import sys
import json

# NEW: Note we prepend the current path - otherwise a guix instance of GN2 may be used instead
sys.path.insert(0, './')

# NEW: import app to avoid a circular dependency on utility.tools
from gn2.wqflask import app

from gn2.utility import hmac
from gn2.utility.tools import get_setting
from gn2.utility.redis_tools import get_redis_conn, get_user_id, add_resource, get_resources, get_resource_info
Redis = get_redis_conn()

import urllib.parse

from gn2.wqflask.database import database_connection


def insert_probeset_resources(cursor, default_owner_id):
    current_resources = Redis.hgetall("resources")
    cursor.execute("""  SELECT
                            ProbeSetFreeze.Id, ProbeSetFreeze.Name, ProbeSetFreeze.confidentiality, ProbeSetFreeze.public
                        FROM
                            ProbeSetFreeze""")

    resource_results = cursor.fetchall()
    for i, resource in enumerate(resource_results):
        resource_ob = {}
        resource_ob['name'] = resource[1]
        resource_ob['owner_id'] = default_owner_id
        resource_ob['data'] = {"dataset": str(resource[0])}
        resource_ob['type'] = "dataset-probeset"
        if resource[2] < 1 and resource[3] > 0:
            resource_ob['default_mask'] = {"data": "view",
                                           "metadata": "view",
                                           "admin": "not-admin"}
        else:
            resource_ob['default_mask'] = {"data": "no-access",
                                           "metadata": "no-access",
                                           "admin": "not-admin"}
        resource_ob['group_masks'] = {}

        add_resource(resource_ob, update=False)


def insert_publish_resources(cursor, default_owner_id):
    current_resources = Redis.hgetall("resources")
    cursor.execute("""  SELECT 
                            PublishXRef.Id, PublishFreeze.Id, InbredSet.InbredSetCode
                        FROM
                            PublishXRef, PublishFreeze, InbredSet, Publication
                        WHERE
                            PublishFreeze.InbredSetId = PublishXRef.InbredSetId AND
                            InbredSet.Id = PublishXRef.InbredSetId AND
                            Publication.Id = PublishXRef.PublicationId""")

    resource_results = cursor.fetchall()
    for resource in resource_results:
        if resource[2]:
            resource_ob = {}
            if resource[2]:
                resource_ob['name'] = resource[2] + "_" + str(resource[0])
            else:
                resource_ob['name'] = str(resource[0])
            resource_ob['owner_id'] = default_owner_id
            resource_ob['data'] = {"dataset": str(resource[1]),
                                   "trait": str(resource[0])}
            resource_ob['type'] = "dataset-publish"
            resource_ob['default_mask'] = {"data": "view",
                                           "metadata": "view",
                                           "admin": "not-admin"}

            resource_ob['group_masks'] = {}

            add_resource(resource_ob, update=False)
        else:
            continue


def insert_geno_resources(cursor, default_owner_id):
    current_resources = Redis.hgetall("resources")
    cursor.execute("""  SELECT
                            GenoFreeze.Id, GenoFreeze.ShortName, GenoFreeze.confidentiality
                        FROM
                            GenoFreeze""")

    resource_results = cursor.fetchall()
    for i, resource in enumerate(resource_results):
        resource_ob = {}
        resource_ob['name'] = resource[1]
        if resource[1] == "HET3-ITPGeno":
            resource_ob['owner_id'] = "c5ce8c56-78a6-474f-bcaf-7129d97f56ae"
        else:
            resource_ob['owner_id'] = default_owner_id
        resource_ob['data'] = {"dataset": str(resource[0])}
        resource_ob['type'] = "dataset-geno"
        if resource[2] < 1:
            resource_ob['default_mask'] = {"data": "view",
                                           "metadata": "view",
                                           "admin": "not-admin"}
        else:
            resource_ob['default_mask'] = {"data": "no-access",
                                           "metadata": "no-access",
                                           "admin": "not-admin"}
        resource_ob['group_masks'] = {}

        add_resource(resource_ob, update=False)


def insert_resources(default_owner_id):
    current_resources = get_resources()
    print("START")
    insert_publish_resources(cursor, default_owner_id)
    print("AFTER PUBLISH")
    insert_geno_resources(cursor, default_owner_id)
    print("AFTER GENO")
    insert_probeset_resources(cursor, default_owner_id)
    print("AFTER PROBESET")


def main(cursor):
    """Generates and outputs (as json file) the data for the main dropdown menus on the home page"""

    Redis.delete("resources")

    owner_id = "c5ce8c56-78a6-474f-bcaf-7129d97f56ae"

    insert_resources(owner_id)


if __name__ == '__main__':
    with database_connection(get_setting("SQL_URI")) as conn:
        with conn.cursor() as cursor:
            main(cursor)