Error: user-error ("Unable to resolve link: \"introduction\"")
mapbacktrace(#f(compiled-function (evald func args flags) #))
debug-early-backtrace()
debug-early(error (user-error "Unable to resolve link: \"introduction\""))
signal(user-error ("Unable to resolve link: \"introduction\""))
user-error("Unable to resolve link: %S" "introduction")
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In principle, Mechanical\nRob runs before code merges get committed to the main server.\n" 0 206 (:parent #184))) (paragraph (:begin 785 :end 1054 :contents-begin 785 :contents-end 1054 :post-blank 0 :post-affiliated 785 :mode nil :granularity nil :parent #180) #("For unit tests, we use python's " 0 32 (:parent #185)) (verbatim (:begin 817 :end 828 :post-blank 1 :value "unittest" :parent #185)) #("framework. Coverage reports\nget generated using " 0 48 (:parent #185)) (link (:type "https" :path "//coverage.readthedocs.io/en/coverage-5.2.1/" :format bracket :raw-link "https://coverage.readthedocs.io/en/coverage-5.2.1/" :application nil :search-option nil :begin 876 :end 944 :contents-begin 930 :contents-end 941 :post-blank 1 :parent #185) #("coverage.py" 0 11 (:parent #191))) #("which you could also use to run\nunit tests. When adding new functionality, it is advisable to add\nunit tests.\n" 0 110 (:parent #185))))) (headline (:raw-value "Run tests" :begin 1055 :end 2404 :pre-blank 1 :contents-begin 1068 :contents-end 2404 :robust-begin 1070 :robust-end 2402 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1055 :title (#("Run tests" 0 9 (:parent #178))) :mode nil :granularity nil :parent #172) (headline (:raw-value "Setup" :begin 1068 :end 1209 :pre-blank 1 :contents-begin 1078 :contents-end 1208 :robust-begin 1080 :robust-end 1206 :level 2 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1068 :title (#("Setup" 0 5 (:parent #181))) :mode section :granularity nil :parent #178) (section (:begin 1078 :end 1209 :contents-begin 1078 :contents-end 1208 :robust-begin 1078 :robust-end 1206 :post-blank 1 :post-affiliated 1078 :mode section :granularity nil :parent #181) (paragraph (:begin 1078 :end 1141 :contents-begin 1078 :contents-end 1140 :post-blank 1 :post-affiliated 1078 :mode planning :granularity nil :parent #184) #("Everything required for testing is already package with guix:\n" 0 62 (:parent #187))) (fixed-width (:begin 1141 :end 1208 :value "./pre-ins-env guix package -i genenetwork2 -p ~/opt/genenetwork2" :post-blank 1 :post-affiliated 1141 :mode nil :granularity nil :parent #184)))) (headline (:raw-value "Running" :begin 1209 :end 2404 :pre-blank 1 :contents-begin 1221 :contents-end 2404 :robust-begin 1223 :robust-end 2402 :level 2 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1209 :title (#("Running" 0 7 (:parent #182))) :mode nil :granularity nil :parent #178) (section (:begin 1221 :end 2404 :contents-begin 1221 :contents-end 2404 :robust-begin 1221 :robust-end 2402 :post-blank 0 :post-affiliated 1221 :mode section :granularity nil :parent #182) (paragraph (:begin 1221 :end 1329 :contents-begin 1221 :contents-end 1328 :post-blank 1 :post-affiliated 1221 :mode planning :granularity nil :parent #185) #("Run the tests from the root of the genenetwork2 source tree as. 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:use-labels t :label-fmt nil :value "alias runpython=\"env GN2_PROFILE=~/opt/gn-latest TMPDIR=/tmp SERVER_PORT=5004 GENENETWORK_FILES=/gnu/data/gn2_data/ ./bin/genenetwork2\"\n\nalias runcmd=\"time env GN2_PROFILE=~/opt/gn-latest TMPDIR=//tmp SERVER_PORT=5004 GENENETWORK_FILES=/gnu/data/gn2_data/ ./bin/genenetwork2 ./gn2/default_settings.py -cli\"\n" :post-blank 1 :post-affiliated 1637 :mode nil :granularity nil :parent #185)) (paragraph (:begin 1970 :end 2026 :contents-begin 1970 :contents-end 2025 :post-blank 1 :post-affiliated 1970 :mode nil :granularity nil :parent #185) #("You could use them in your " 0 27 (:parent #193)) (verbatim (:begin 1997 :end 2007 :post-blank 1 :value ".bashrc" :parent #193)) #("or " 0 3 (:parent #193)) (verbatim (:begin 2010 :end 2019 :post-blank 1 :value ".zshrc" :parent #193)) #("file.\n" 0 6 (:parent #193))) (paragraph (:begin 2026 :end 2046 :contents-begin 2026 :contents-end 2045 :post-blank 1 :post-affiliated 2026 :mode nil :granularity nil :parent #185) #("To run unit tests:\n" 0 19 (:parent #194))) (fixed-width (:begin 2046 :end 2083 :value "runpython -m unittest discover -v" :post-blank 2 :post-affiliated 2046 :mode nil :granularity nil :parent #185)) (paragraph (:begin 2083 :end 2126 :contents-begin 2083 :contents-end 2125 :post-blank 1 :post-affiliated 2083 :mode nil :granularity nil :parent #185) #("Or alternatively using the coverage tool:\n" 0 42 (:parent #196))) (fixed-width (:begin 2126 :end 2173 :value "runcmd coverage run -m unittest discover -v" :post-blank 2 :post-affiliated 2126 :mode nil :granularity nil :parent #185)) (paragraph (:begin 2173 :end 2244 :contents-begin 2173 :contents-end 2243 :post-blank 1 :post-affiliated 2173 :mode nil :granularity nil :parent #185) #("To generate a html coverage report in " 0 38 (:parent #198)) (verbatim (:begin 2211 :end 2242 :post-blank 0 :value "wqflask/coverage_html_report/" :parent #198)) #("\n" 0 1 (:parent #198))) (fixed-width (:begin 2244 :end 2268 :value "runcmd 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:post-blank 0 :parent #349) #("database" 0 8 (:parent #355))) #("; a setup we call Mechanical Rob because it emulates\nsomeone clicking through the website and checking results.\n" 0 112 (:parent #349))) (paragraph (:begin 578 :end 785 :contents-begin 578 :contents-end 784 :post-blank 1 :post-affiliated 578 :mode nil :granularity nil :parent #346) #("These scripts invoke calls to a running webserver and test the response.\nIf a page changes or breaks, tests will fail. 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In principle, Mechanical\nRob runs before code merges get committed to the main server.\n" 0 206 (:parent #350))) (paragraph (:begin 785 :end 1054 :contents-begin 785 :contents-end 1054 :post-blank 0 :post-affiliated 785 :mode nil :granularity nil :parent #346) #("For unit tests, we use python's " 0 32 (:parent #351)) (verbatim (:begin 817 :end 828 :post-blank 1 :value "unittest" :parent #351)) #("framework. Coverage reports\nget generated using " 0 48 (:parent #351)) (link (:type "https" :path "//coverage.readthedocs.io/en/coverage-5.2.1/" :format bracket :raw-link "https://coverage.readthedocs.io/en/coverage-5.2.1/" :application nil :search-option nil :begin 876 :end 944 :contents-begin 930 :contents-end 941 :post-blank 1 :parent #351) #("coverage.py" 0 11 (:parent #357))) #("which you could also use to run\nunit tests. 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:post-blank 0 :parent #349) #("database" 0 8 (:parent #355))) #("; a setup we call Mechanical Rob because it emulates\nsomeone clicking through the website and checking results.\n" 0 112 (:parent #349))) (paragraph (:begin 578 :end 785 :contents-begin 578 :contents-end 784 :post-blank 1 :post-affiliated 578 :mode nil :granularity nil :parent #346) #("These scripts invoke calls to a running webserver and test the response.\nIf a page changes or breaks, tests will fail. 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In principle, Mechanical\nRob runs before code merges get committed to the main server.\n" 0 206 (:parent #106))) (paragraph (:begin 785 :end 1054 :contents-begin 785 :contents-end 1054 :post-blank 0 :post-affiliated 785 :mode nil :granularity nil :parent #102) #("For unit tests, we use python's " 0 32 (:parent #107)) (verbatim (:begin 817 :end 828 :post-blank 1 :value "unittest" :parent #107)) #("framework. Coverage reports\nget generated using " 0 48 (:parent #107)) (link (:type "https" :path "//coverage.readthedocs.io/en/coverage-5.2.1/" :format bracket :raw-link "https://coverage.readthedocs.io/en/coverage-5.2.1/" :application nil :search-option nil :begin 876 :end 944 :contents-begin 930 :contents-end 941 :post-blank 1 :parent #107) #("coverage.py" 0 11 (:parent #113))) #("which you could also use to run\nunit tests. When adding new functionality, it is advisable to add\nunit tests.\n" 0 110 (:parent #107))))) (headline (:raw-value "Run tests" :begin 1055 :end 2404 :pre-blank 1 :contents-begin 1068 :contents-end 2404 :robust-begin 1070 :robust-end 2402 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1055 :title (#("Run tests" 0 9 (:parent #100))) :mode nil :granularity nil :parent #94) (headline (:raw-value "Setup" :begin 1068 :end 1209 :pre-blank 1 :contents-begin 1078 :contents-end 1208 :robust-begin 1080 :robust-end 1206 :level 2 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1068 :title (#("Setup" 0 5 (:parent #103))) :mode section :granularity nil :parent #100) (section (:begin 1078 :end 1209 :contents-begin 1078 :contents-end 1208 :robust-begin 1078 :robust-end 1206 :post-blank 1 :post-affiliated 1078 :mode section :granularity nil :parent #103) (paragraph (:begin 1078 :end 1141 :contents-begin 1078 :contents-end 1140 :post-blank 1 :post-affiliated 1078 :mode planning :granularity nil :parent #106) #("Everything required for testing is already package with guix:\n" 0 62 (:parent #109))) (fixed-width (:begin 1141 :end 1208 :value "./pre-ins-env guix package -i genenetwork2 -p ~/opt/genenetwork2" :post-blank 1 :post-affiliated 1141 :mode nil :granularity nil :parent #106)))) (headline (:raw-value "Running" :begin 1209 :end 2404 :pre-blank 1 :contents-begin 1221 :contents-end 2404 :robust-begin 1223 :robust-end 2402 :level 2 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1209 :title (#("Running" 0 7 (:parent #104))) :mode nil :granularity nil :parent #100) (section (:begin 1221 :end 2404 :contents-begin 1221 :contents-end 2404 :robust-begin 1221 :robust-end 2402 :post-blank 0 :post-affiliated 1221 :mode section :granularity nil :parent #104) (paragraph (:begin 1221 :end 1329 :contents-begin 1221 :contents-end 1328 :post-blank 1 :post-affiliated 1221 :mode planning :granularity nil :parent #107) #("Run the tests from the root of the genenetwork2 source tree as. 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1052 :post-blank 1 :post-affiliated 228 :mode section :granularity nil :parent #343) (paragraph (:begin 228 :end 578 :contents-begin 228 :contents-end 577 :post-blank 1 :post-affiliated 228 :mode planning :granularity nil :parent #346) #("For integration testing, we currently use " 0 42 (:parent #349)) (link (:type "https" :path "//github.com/genenetwork/genenetwork2/tree/testing/test/requests" :format bracket :raw-link "https://github.com/genenetwork/genenetwork2/tree/testing/test/requests" :application nil :search-option nil :begin 270 :end 360 :contents-begin 344 :contents-end 357 :post-blank 1 :parent #349) #("Mechanica Rob" 0 13 (:parent #353))) #("against the\nsmall " 0 18 (:parent #349)) (link (:type "https" :path "//github.com/genenetwork/genenetwork2/blob/testing/doc/database.org" :format bracket :raw-link "https://github.com/genenetwork/genenetwork2/blob/testing/doc/database.org" :application nil :search-option nil :begin 378 :end 465 :contents-begin 455 :contents-end 463 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In principle, Mechanical\nRob runs before code merges get committed to the main server.\n" 0 206 (:parent #350))) (paragraph (:begin 785 :end 1054 :contents-begin 785 :contents-end 1054 :post-blank 0 :post-affiliated 785 :mode nil :granularity nil :parent #346) #("For unit tests, we use python's " 0 32 (:parent #351)) (verbatim (:begin 817 :end 828 :post-blank 1 :value "unittest" :parent #351)) #("framework. Coverage reports\nget generated using " 0 48 (:parent #351)) (link (:type "https" :path "//coverage.readthedocs.io/en/coverage-5.2.1/" :format bracket :raw-link "https://coverage.readthedocs.io/en/coverage-5.2.1/" :application nil :search-option nil :begin 876 :end 944 :contents-begin 930 :contents-end 941 :post-blank 1 :parent #351) #("coverage.py" 0 11 (:parent #357))) #("which you could also use to run\nunit tests. 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command-line--load-script("/gnu/store/0h55qvzlzmvwgigk6nrzcc6s2g30ddm0-org2html.el")
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command-line()
normal-top-level()
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