Error: user-error ("Unable to resolve link: \"introduction\"")
mapbacktrace(#f(compiled-function (evald func args flags) #))
debug-early-backtrace()
debug-early(error (user-error "Unable to resolve link: \"introduction\""))
signal(user-error ("Unable to resolve link: \"introduction\""))
user-error("Unable to resolve link: %S" "introduction")
org-export-data((link (:type "custom-id" :path "introduction" :format bracket :raw-link "#introduction" :application nil :search-option nil :begin 115 :end 146 :contents-begin 132 :contents-end 144 :post-blank 0 :parent (paragraph (:begin 115 :end 147 :contents-begin 115 :contents-end 147 :post-blank 0 :post-affiliated 115 :mode nil :granularity nil :parent (item (:bullet "- " :begin 113 :end 147 :contents-begin 115 :contents-end 147 :checkbox nil :counter nil :structure ((113 0 "- " nil nil nil 147) (147 0 "- " nil nil nil 209) (209 0 "- " nil nil nil 259)) :pre-blank 0 :post-blank 0 :post-affiliated 113 :tag nil :mode item :granularity nil :parent (plain-list (:type unordered :begin 113 :end 259 :contents-begin 113 :contents-end 259 :structure ((113 0 "- " nil nil nil 147) (147 0 "- " nil nil nil 209) (209 0 "- " nil nil nil 259)) :post-blank 0 :post-affiliated 113 :mode planning :granularity nil :parent (section (:begin 113 :end 260 :contents-begin 113 :contents-end 259 :robust-begin 113 :robust-end 257 :post-blank 1 :post-affiliated 113 :mode section :granularity nil :parent (headline (:raw-value "Table of Contents" :begin 35 :end 260 :pre-blank 0 :contents-begin 113 :contents-end 259 :robust-begin 115 :robust-end 257 :level 1 :priority nil :tags ("TOC") :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 35 :title (#("Table of Contents" 0 17 (:parent #126))) :mode nil :granularity nil :parent (org-data (:begin 1 :contents-begin 1 :contents-end 2817 :end 2817 :robust-begin 3 :robust-end 2815 :post-blank 0 :post-affiliated 1 :path nil :mode org-data :CATEGORY nil :granularity nil) (section (:begin 1 :end 35 :contents-begin 1 :contents-end 34 :robust-begin 1 :robust-end 32 :post-blank 1 :post-affiliated 1 :mode first-section :granularity nil :parent #172) (keyword (:key "TITLE" :value "Genenetwork2 Dockerized" :begin 1 :end 34 :post-blank 0 :post-affiliated 1 :mode top-comment :granularity nil :parent #175))) #126 (headline (:raw-value "Introduction" :begin 260 :end 926 :pre-blank 1 :contents-begin 276 :contents-end 925 :robust-begin 278 :robust-end 923 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 260 :title (#("Introduction" 0 12 (:parent #177))) :mode nil :granularity nil :parent #172) (section (:begin 276 :end 926 :contents-begin 276 :contents-end 925 :robust-begin 276 :robust-end 923 :post-blank 1 :post-affiliated 276 :mode section :granularity nil :parent #177) (paragraph (:begin 276 :end 600 :contents-begin 276 :contents-end 599 :post-blank 1 :post-affiliated 276 :mode planning :granularity nil :parent #180) #("The CI(Continuous Integration) system for Genenetwork2 uses " 0 60 (:parent #183)) (link (:type "https" :path "//github.com/features/actions" :format bracket :raw-link "https://github.com/features/actions" :application nil :search-option nil :begin 336 :end 391 :contents-begin 375 :contents-end 389 :post-blank 0 :parent #183) #("Github\nActions" 0 14 (:parent #187))) #(". As such, it's important to have a way to run tests using\nfacilities provided by GUIX in a reproducible way. This project\nleverages GUIX to generate a docker container from which the unittests\nare ran from.\n" 0 208 (:parent #183))) (paragraph (:begin 600 :end 830 :contents-begin 600 :contents-end 829 :post-blank 1 :post-affiliated 600 :mode nil :granularity nil :parent #180) #("Find instructions on how to set docker up inside GUIX " 0 54 (:parent #184)) (link (:type "https" :path "//github.com/pjotrp/guix-notes/blob/master/CONTAINERS.org#run-docker" :format bracket :raw-link "https://github.com/pjotrp/guix-notes/blob/master/CONTAINERS.org#run-docker" :application nil :search-option nil :begin 654 :end 738 :contents-begin 732 :contents-end 736 :post-blank 0 :parent #184) #("here" 0 4 (:parent #188))) #(". This\ndocument will not get into that. It's assumed that you have a working\ndocker setup.\n" 0 91 (:parent #184))) (paragraph (:begin 830 :end 925 :contents-begin 830 :contents-end 925 :post-blank 0 :post-affiliated 830 :mode nil :granularity nil :parent #180) #("The rest of this document outlines how the docker container used in\nthe CI builds was created.\n" 0 95 (:parent #185))))) (headline (:raw-value "Creating the Docker Images" :begin 926 :end 2194 :pre-blank 1 :contents-begin 956 :contents-end 2193 :robust-begin 958 :robust-end 2191 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 926 :title (#("Creating the Docker Images" 0 26 (:parent #178))) :mode nil :granularity nil :parent #172) (section (:begin 956 :end 2194 :contents-begin 956 :contents-end 2193 :robust-begin 956 :robust-end 2191 :post-blank 1 :post-affiliated 956 :mode section :granularity nil :parent #178) (paragraph (:begin 956 :end 1071 :contents-begin 956 :contents-end 1070 :post-blank 1 :post-affiliated 956 :mode planning :granularity nil :parent #181) #("The general idea is that GUIX is used to generate a set of binaries,\nwhich will be added to a base mariaDB image.\n" 0 114 (:parent #184))) (paragraph (:begin 1071 :end 1117 :contents-begin 1071 :contents-end 1116 :post-blank 1 :post-affiliated 1071 :mode nil :granularity nil :parent #181) #("First create the gn2 tar archive by running:\n" 0 45 (:parent #185))) (src-block (:language "sh" :switches nil :parameters nil :begin 1117 :end 1343 :number-lines nil :preserve-indent nil :retain-labels t :use-labels t :label-fmt nil :value "env GUIX_PACKAGE_PATH=\"/home/bonface/projects/guix-bioinformatics:/home/bonface/projects/guix-past/modules\" \\\n ./pre-inst-env guix pack --no-grafts\\\n -S /gn2-profile=/ \\\n screen genenetwork2\n" :post-blank 1 :post-affiliated 1117 :mode nil :granularity nil :parent #181)) (paragraph (:begin 1343 :end 1387 :contents-begin 1343 :contents-end 1386 :post-blank 1 :post-affiliated 1343 :mode nil :granularity nil :parent #181) #("The output will look something similar to:\n" 0 43 (:parent #187))) (fixed-width (:begin 1387 :end 1454 :value "/gnu/store/x3m77vwaqcwba24p5s4lrb7w2ii16lj9-tarball-pack.tar.gz" :post-blank 2 :post-affiliated 1387 :mode nil :granularity nil :parent #181)) (paragraph (:begin 1454 :end 1640 :contents-begin 1454 :contents-end 1639 :post-blank 1 :post-affiliated 1454 :mode nil :granularity nil :parent #181) #("Now create a folder from which will host the following dockerfile. You\ncan name this file Dockerfile. 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\n
" :html-format-drawer-function #f(compiled-function (name contents) #%s:
\n\n%s\n
\n