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<!doctype html>
<head>
<!-- Required meta tags -->
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta http-equiv="X-UA-Compatible" content="ie=edge">
<!-- Bootstrap CSS -->
<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css" integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T" crossorigin="anonymous">
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<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">
<link rel=stylesheet type=text/css href="{{ url_for('static', filename='style.css') }}">
<title>GeneCup: Mining Gene Relationships from Pubmed using Custom Ontology </title>
</head>
<body>
<!-- Navigation bar -->
<nav class="navbar navbar-expand-lg navbar-dark bg-dark">
<div class="col-1">
<a href="/"><div class='img'><img src="/static/white_logo.png" class="img-fluid", style="width:60%"></div></a>
</div>
<a class="navbar-brand" href="/">GeneCup</a>
<button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarSupportedContent" aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarSupportedContent">
<ul class="navbar-nav mr-auto">
<li class="nav-item active">
<a class="nav-link" href="/">Search <span class="sr-only">(current)</span></a>
</li>
<li class="nav-item">
<a class="nav-link" href="/ontology">Ontologies</a>
</li>
<li class="nav-item">
<a class="nav-link" href="/allTopGenes">Addiction Genes</a>
</li>
<li class="nav-item">
<a class="nav-link" href="/about">About</a>
</li>
</ul>
{% if session['email'] == email %}
<ul class="navbar-nav ml-auto">
<li class="nav-item dropdown">
<a class="nav-link dropdown-toggle" href="#" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">
Login<span class="sr-only">(current)</span>
</a>
<div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown">
<form class="p-2" action="/login" method="POST">
<div class="form-group">
<input type="email" class="form-control" name="email" id="email" aria-describedby="emailHelp" placeholder="Email address", value="{{email if email}}">
</div>
<div class="form-group">
<input type="password" class="form-control" name="password" id="password" placeholder="Password">
<div class="dropdown-divider"></div>
<button type="submit" class="btn btn-primary btn-block">Sign in</button>
</div>
</form>
</div>
</li>
<a class="nav-link" href="/signup">Sign Up</a>
</ul>
{%else%}
<ul class="navbar-nav ml-auto">
<li class="nav-item active">
{%if session['name'] != "" %}
<a class="nav-link" href="/userarchive">{{session['name']}}'s search history</a> <span class="sr-only">(current)</span></a>
</li>
{%endif%}
<li class="nav-item">
<a class="nav-link active" href="/logout">Logout</a>
</li>
</ul>
{%endif%}
</div>
</nav>
<!-- Warning messages -->
<div align="right">
{% with messages = get_flashed_messages()%}
{% if messages %}
<ul class=flashes>
{% for message in messages %}
<div class="inval">{{ message }}</div>
{% endfor %}
</ul>
{% endif %}
{% endwith %}
</div>
<div class="container main">
{% block content %}{% endblock %}
</div>
{% if not no_footer %}
<footer class="footer bg-dark footer-dark">
<div class="container">
<div class="row">
<div class="col-md-6">
GeneCup {{ version }}: PubMed + GWAS catalog deep learning.
Cite <a href="https://academic.oup.com/g3journal/article/12/5/jkac059/6548160">GeneCup.</a>
</div>
<div class="col-md-6" align="right">
<a href="https://git.genenetwork.org/genecup/">Code</a>
powered by <a href="https://www.tensorflow.org/">Tensorflow</a> on <a href="https://genenetwork.org/">GeneNetwork.org</a>
</div>
</div>
</div>
</footer>
{% endif %}
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</body>
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