From 6235fb58955e2bc193d6ce40a4d74b33ab47dfce Mon Sep 17 00:00:00 2001 From: gunturkunhakan Date: Tue, 18 May 2021 22:39:49 -0500 Subject: Welcome to GeneCup --- templates/index.html | 131 +++++++++++++++++++++++++++++++++------------------ 1 file changed, 85 insertions(+), 46 deletions(-) (limited to 'templates/index.html') diff --git a/templates/index.html b/templates/index.html index dc235c5..5849be9 100644 --- a/templates/index.html +++ b/templates/index.html @@ -2,52 +2,91 @@ {% block content %} {{ message | safe }} -

Relationship with Addiction Through Searches of PubMed -

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RatsPub is a tool to efficiently and comprehensively answer the question "What do we know about these genes and addiction?". - -

RatsPub answers this question by searching PubMed to find sentences containing the query terms (i.e., gene symbols) and over 300 drug addiction-related keywords that are organized into six categories. Data from NHGRI-EBI GWAS catalog are also included in the search. These gene-keyword relationships are presented as an interactive graph and a table. -

Gene alias often include non-specific words and are thus not included in the initial search. However, a list of alias can be found by clicking on the gene symbol in the results section. These alias then can be searched with a single click. -

-You can create an account if you need to save your results. Up to 30 gene symbols can be entered in the box below. Gene symbols can be separated by either a space or a semicolon. -
Example: Rgma Nrxn3 Chrna3. - -

- {%if "name" in session %} - {{session['name']}}, your previous searches are available in the archive . - {% else %} - {% endif %} - - - -

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- Please choose keyword categories to be included in the search: - -
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Mining Gene Relationships from PubMed using Custom Ontologies

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GeneCup is a tool to efficiently and comprehensively answer the question "What do we know about these genes and the topic I study?". + GeneCup answers this question by searching PubMed to find sentences containing gene symbols and a custom list of keywords. + These keywords are organized into a user defined ontology, which groups related keywords together for better organization of the results. + Human GWAS findings from NHGRI-EBI GWAS catalog are also included in the search. + These gene-keyword relationships are presented as an interactive graph and a table. + + As an example, we present a curated ontology for drug addiction with over 300 keywords organized into seven categories. + A user account (free) is needed to create custom ontologies and save the search results. +

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Example: Rgma Nrxn3.

+ + {%if ("name" not in session) %} + By default, the addiction ontology is used. Custom ontologies can be created in user accounts. + Please choose keyword categories to be included in the search. + +
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+ Up to 200 gene symbols can be entered in the box below. Gene symbols can be separated by a space, a comma or a semicolon.
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+ + {% else %} + Welcome back, {{session['name']}}. Your previous searches + and custom ontologies are available from the links. + +
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Please select an ontology to use for the new search
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+ + The {{ontol}} ontology is selected. Please choose categories to be included in the search. + Expect a longer wait time when you include Human GWAS category. + +
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+ Up to 200 gene symbols can be entered in the box below. Gene symbols can be separated by a space, a comma or a semicolon.
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+ {% endif %} +
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+ + + +{%if "name" in session %} + +{% endif %} + {% endblock %} -- cgit v1.2.3