aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorpjotrp2017-02-27 08:49:40 +0000
committerpjotrp2017-02-27 08:49:40 +0000
commitee9c6e5fed733634c749659c3ccbd05a5909e217 (patch)
tree79a934c7b028e2db546df9bc0f34927a59a6cadb
parentb1d528168663319ad453a80d21aa30ec46c04bd6 (diff)
downloadguix-bioinformatics-ee9c6e5fed733634c749659c3ccbd05a5909e217.tar.gz
phewas.scm: started on Phewas package
-rw-r--r--gn/packages/phewas.scm73
1 files changed, 73 insertions, 0 deletions
diff --git a/gn/packages/phewas.scm b/gn/packages/phewas.scm
new file mode 100644
index 0000000..d3a1288
--- /dev/null
+++ b/gn/packages/phewas.scm
@@ -0,0 +1,73 @@
+(define-module (gn packages phewas)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix utils)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system gnu)
+ #:use-module (guix build-system cmake)
+ #:use-module (guix build-system perl)
+ #:use-module (guix build-system python)
+ #:use-module (guix build-system ruby)
+ #:use-module (guix build-system r)
+ #:use-module (guix build-system trivial)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages algebra)
+ #:use-module (gnu packages base)
+ #:use-module (gnu packages bioinformatics)
+ #:use-module (gnu packages boost)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages cpio)
+ #:use-module (gnu packages file)
+ #:use-module (gnu packages gcc)
+ #:use-module (gnu packages java)
+ #:use-module (gnu packages linux)
+ #:use-module (gnu packages machine-learning)
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages ncurses)
+ #:use-module (gnu packages perl)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages popt)
+ #:use-module (gnu packages protobuf)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages ruby)
+ #:use-module (gnu packages statistics)
+ #:use-module (gnu packages tbb)
+ #:use-module (gnu packages textutils)
+ #:use-module (gnu packages vim)
+ #:use-module (gnu packages web)
+ #:use-module (gnu packages xml)
+ #:use-module (gnu packages zip)
+ #:use-module (gnu packages bootstrap)
+ #:use-module (srfi srfi-1))
+
+(define-public r-auwerxlab ; GN2
+ (package
+ (name "r-auwerxlab")
+ (version "0.0.0-1")
+ (source #f)
+ (build-system trivial-build-system)
+ (propagated-inputs
+ `(
+ ("r" ,r)
+ ("r-data-table" ,r-data-table)
+ ))
+ (arguments
+ `(#:guile ,%bootstrap-guile
+ #:modules ((guix build utils))
+ #:builder
+ (let* ((out (assoc-ref %outputs "out"))
+ (bash (assoc-ref %build-inputs "bash"))
+ (foo (string-append out "/foo")))
+ (begin
+ (use-modules (guix build utils))
+ (mkdir out)
+ #t))))
+
+ (home-page
+ "None")
+ (synopsis
+ "None")
+ (description
+ "None.")
+ (license license:gpl2+)))