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authorpjotrp2017-03-06 07:02:47 +0000
committerpjotrp2017-03-06 07:02:47 +0000
commitb2fed0e839f8654635545095bab095c9a9e1b844 (patch)
tree4d0425e112b9e9af222fa51df907f80111e85255
parent7e81557cf3be8badaf133861b1c355fb7a9a226a (diff)
downloadguix-bioinformatics-b2fed0e839f8654635545095bab095c9a9e1b844.tar.gz
r-lmmlite: move to lmm.scm
-rw-r--r--gn/packages/genenetwork.scm1
-rw-r--r--gn/packages/lmm.scm24
-rw-r--r--gn/packages/statistics.scm23
3 files changed, 24 insertions, 24 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 9199f00..29915b2 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -107,7 +107,6 @@
     (arguments
      `(#:python ,python-2
        #:tests? #f))   ; no 'setup.py test' really!
-
     (home-page "http://qtlreaper.sourceforge.net/")
     (synopsis "Scan expression data for QTLs")
     (description
diff --git a/gn/packages/lmm.scm b/gn/packages/lmm.scm
index bcb6c47..3761db7 100644
--- a/gn/packages/lmm.scm
+++ b/gn/packages/lmm.scm
@@ -41,6 +41,30 @@
   #:use-module (gnu packages bootstrap)
   #:use-module (srfi srfi-1))
 
+
+(define-public r-lmmlite
+  (package
+    (name "r-lmmlite")
+    (version "0.1-9")
+    (source (origin
+              ;; We use the git reference, because there's no CRAN package (yet)
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/kbroman/lmmlite.git")
+                    (commit "5b833d5")))
+              (file-name (string-append name "-" version "-checkout"))
+              (sha256
+               (base32
+                "0v4z4qxa8ki9hlmdwlgslchvg21nqkkq6135nx6w63xikjffxcba"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-rcppeigen" ,r-rcppeigen)))
+    (synopsis "R/lmmlite")
+    (description
+     "R/lmmlite")
+    (home-page "https://github.com/kbroman/")
+    (license license:asl2.0)))
+
 (define-public r-emma ; guix potential candidate (not in CRAN)
   (package
    (name "r-emma")
diff --git a/gn/packages/statistics.scm b/gn/packages/statistics.scm
index 4af5cc5..af8f8ef 100644
--- a/gn/packages/statistics.scm
+++ b/gn/packages/statistics.scm
@@ -301,29 +301,6 @@
     "Data and Functions from the book R Graphics, Second Edition.  There is a function to produce each figure in the book, plus several functions, classes, and methods defined in Chapter 8.")
   (license license:gpl2+)))
 
-(define-public r-lmmlite
-  (package
-    (name "r-lmmlite")
-    (version "0.1-9")
-    (source (origin
-              ;; We use the git reference, because there's no CRAN package (yet)
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/kbroman/lmmlite.git")
-                    (commit "5b833d5")))
-              (file-name (string-append name "-" version "-checkout"))
-              (sha256
-               (base32
-                "0v4z4qxa8ki9hlmdwlgslchvg21nqkkq6135nx6w63xikjffxcba"))))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-rcppeigen" ,r-rcppeigen)))
-    (synopsis "R/lmmlite")
-    (description
-     "R/lmmlite")
-    (home-page "https://github.com/kbroman/")
-    (license license:asl2.0)))
-
 (define-public pylmm-gn2
   (let ((commit "3c6d1cac8"))
   (package