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authorEfraim Flashner2020-02-17 02:14:35 -0600
committerEfraim Flashner2020-02-17 02:14:35 -0600
commita07cc9e17734383f2b305b1fc05a683500539383 (patch)
treeee923a1579d7f613bdc57a579732ee1e95049dc9
parent1b33411fca0c3a059542525f5e317bfe00d8c060 (diff)
downloadguix-bioinformatics-a07cc9e17734383f2b305b1fc05a683500539383.tar.gz
add archive-pubmed systemd service and timer
-rw-r--r--gn/services/archive-pubmed.service13
-rw-r--r--gn/services/archive-pubmed.timer9
2 files changed, 22 insertions, 0 deletions
diff --git a/gn/services/archive-pubmed.service b/gn/services/archive-pubmed.service
new file mode 100644
index 0000000..fd00b71
--- /dev/null
+++ b/gn/services/archive-pubmed.service
@@ -0,0 +1,13 @@
+[Unit]
+Description=Download PubMed Archives
+After=network-online.target
+Wants=network-online.target
+AssertPathExists=/export2/PubMed
+
+[Service]
+ExecStart=/usr/local/guix-profiles/ratspub/bin/archive-pubmed
+Environment="EDIRECT_PUBMED_MASTER=/export2/PubMed" "PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt" "PATH=/usr/local/guix-profiles/ratspub/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin:/usr/sbin"
+User=hchen
+
+[Install]
+WantedBy=multi-user.target
diff --git a/gn/services/archive-pubmed.timer b/gn/services/archive-pubmed.timer
new file mode 100644
index 0000000..4bb27ba
--- /dev/null
+++ b/gn/services/archive-pubmed.timer
@@ -0,0 +1,9 @@
+[Unit]
+Description=Daily PubMed downloads
+
+[Timer]
+OnBootSec=5h
+OnUnitInactiveSec=15h
+
+[Install]
+WantedBy=default.target