diff options
| author | pjotrp | 2020-11-28 16:20:53 +0000 |
|---|---|---|
| committer | pjotrp | 2020-11-28 16:20:53 +0000 |
| commit | 697a8d85ddb765aae22c757dc194052e09011dab (patch) | |
| tree | 038a344a9875b94a617b3ebec1b0eeadbc90ae9d | |
| parent | 16aeca47b1c3b9a6cbede7ab78945bbbf1aebf5e (diff) | |
| download | guix-bioinformatics-697a8d85ddb765aae22c757dc194052e09011dab.tar.gz | |
gemma-gn2: updated to latest
| -rw-r--r-- | README.org | 2 | ||||
| -rw-r--r-- | gn/packages/gemma.scm | 10 | ||||
| -rw-r--r-- | gn/packages/yaj.scm | 1 |
3 files changed, 7 insertions, 6 deletions
@@ -61,6 +61,8 @@ Install slurm with * Common Workflow Language (CWL) +/Note that CWL moved into Guix master!/ + Install the common workflow language tool cwltool from this repo with #+BEGIN_SRC bash diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index e6d49b4..e780ea5 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -101,10 +101,10 @@ (define-public gemma-gn2 ; Version used in GeneNetwork. Guix candidate - generic openblas version - (let ((commit "97547ee82e0bd1cc2210612415b0ceb135dbba6d")) + (let ((commit "f623b4775d47b2c2697a4925bd044412a7db49d3")) (package (name "gemma-gn2") - (version (string-append "0.98.2-" (string-take commit 7))) + (version (string-append "0.98.3-" (string-take commit 7))) (source (origin (method git-fetch) (uri (git-reference @@ -113,7 +113,7 @@ (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "0p6pw4gm5fqr4yb9vklgj5abvqazmp1kk9cg3l2n8qsrj1p7j657")))) + "1p8a7kkfn1mmrg017aziy544aha8i9h6wd1x2dk3w2794wl33qb7")))) ; guix environment -C guix --ad-hoc gcc-toolchain gdb gsl openblas zlib bash ld-wrapper perl vim which (inputs `( ("gsl" ,gsl) @@ -177,10 +177,10 @@ genome-wide association studies (GWAS).") )) (define-public gemma-gn2-dev ; Dev version for GeneNetwork. Not a Guix candidate - (let ((commit "d53a04edc476d820de7a611cacc8b105115aa3cc")) + (let ((commit "f623b4775d47b2c2697a4925bd044412a7db49d3")) (package (name "gemma-gn2-dev") - (version (string-append "0.98.2-" (string-take commit 7))) + (version (string-append "0.98.3-" (string-take commit 7))) (source (origin (method git-fetch) (uri (git-reference diff --git a/gn/packages/yaj.scm b/gn/packages/yaj.scm index dc19f0f..1b56f42 100644 --- a/gn/packages/yaj.scm +++ b/gn/packages/yaj.scm @@ -45,7 +45,6 @@ #:use-module (gnu packages bootstrap) #:use-module (gnu packages version-control) #:use-module (gn packages bioinformatics) - #:use-module (gn packages gemma) #:use-module (gn packages javascript) #:use-module (gn packages phewas) #:use-module (gn packages python) |