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authorpjotrp2016-09-29 09:02:12 +0000
committerpjotrp2016-09-29 09:02:12 +0000
commit0faf539f52baea1157da945f1170f890b52bd635 (patch)
tree5824119b5fc785991f515d8ee047bb37c83584db
parent9351ff09f6ac8c557ce3e847518f04f281e7b3dc (diff)
downloadguix-bioinformatics-0faf539f52baea1157da945f1170f890b52bd635.tar.gz
qtlreaper: updated to package that checks for out of bound errors
-rw-r--r--gn/packages/genenetwork.scm26
1 files changed, 13 insertions, 13 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index d8a1813..85c1419 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -88,20 +88,20 @@
(license #f)))
(define-public qtlreaper
+ (let ((commit "cf6f307271e9d958adad1fe1bd03730822555c78"))
(package
(name "qtlreaper")
- (version "1.1.1")
- (source
- (origin
- (method url-fetch)
- (uri (string-append
- "mirror://sourceforge/qtlreaper/qtlreaper-" version ".tar.gz"
- ;; "http://downloads.sourceforge.net/project/qtlreaper/qtlreaper/1.1.1/qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb"))
- ))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "0rbf030940nbbbkggdq2dxiy3c0jv8l4y3vvyfxhqimgj0qv3l1x"))))
+ (version (string-append "1.1-gn2" (string-take commit 7) ))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ ;; (url "https://github.com/genenetwork/genenetwork2.git")
+ (url "https://github.com/pjotrp/QTLreaper.git")
+ (commit commit)))
+ (file-name (string-append name "-" (string-take commit 7)))
+ (sha256
+ (base32
+ "02j0ybzp7rc7n4vingqqssfcrswxg6d3pqysdhjzga3mjwbc0q02"))))
(build-system python-build-system)
;; (native-inputs
;; `(("python-setuptools" ,python-setuptools)))
@@ -120,7 +120,7 @@ test, it performs only as many permutations as are necessary to define
the empirical P-value to a reasonable precision. It also performs
bootstrap resampling to estimate the confidence region for the
location of a putative QTL.")
- (license license:gpl2+)))
+ (license license:gpl2+))))
(define-public genenetwork1
(let ((commit "d622c803b"))