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| author | Frederick Muriuki Muriithi | 2024-08-28 17:40:56 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-08-28 18:00:05 -0500 |
| commit | f95037b93329d5a4953b81ba1b58e4028a6274e8 (patch) | |
| tree | 756659066daf92fd3e119864f6fca9ca7677d36d | |
| parent | 06c6a7f7f42e8ff2d33a934ff695efde24d26d65 (diff) | |
| download | gn-uploader-f95037b93329d5a4953b81ba1b58e4028a6274e8.tar.gz | |
Fix imports, and minor bugs.
| -rw-r--r-- | r_qtl/r_qtl2_qc.py | 3 | ||||
| -rw-r--r-- | uploader/base_routes.py | 6 | ||||
| -rw-r--r-- | uploader/expression_data/index.py | 3 |
3 files changed, 8 insertions, 4 deletions
diff --git a/r_qtl/r_qtl2_qc.py b/r_qtl/r_qtl2_qc.py index 6f7b374..7b26b50 100644 --- a/r_qtl/r_qtl2_qc.py +++ b/r_qtl/r_qtl2_qc.py @@ -8,6 +8,7 @@ from r_qtl import r_qtl2 as rqtl2 from r_qtl import exceptions as rqe from r_qtl.r_qtl2 import FILE_TYPES from r_qtl.fileerrors import MissingFile +from r_qtl.exceptions import InvalidFormat from quality_control.errors import InvalidValue from quality_control.checks import decimal_points_error @@ -86,7 +87,7 @@ def missing_files(bundlesrc: Union[Path, ZipFile]) -> tuple[tuple[str, str], ... return __missing_from_zipfile__(bundlesrc, cdata) if isinstance(bundlesrc, Path): if is_zipfile(bundlesrc): - return __missing_from_zipfile__(ZipFile(bundlesrc, cdata)) + return __missing_from_zipfile__(ZipFile(bundlesrc), cdata) if bundlesrc.is_dir(): return __missing_from_dirpath__(bundlesrc, cdata) raise InvalidFormat( diff --git a/uploader/base_routes.py b/uploader/base_routes.py index 39db31f..88247b2 100644 --- a/uploader/base_routes.py +++ b/uploader/base_routes.py @@ -1,7 +1,11 @@ """Basic routes required for all pages""" import os -from flask import Blueprint, render_template, send_from_directory +from flask import ( + Blueprint, + render_template, + current_app as app, + send_from_directory) from uploader.oauth2.client import user_logged_in diff --git a/uploader/expression_data/index.py b/uploader/expression_data/index.py index a334c51..799989e 100644 --- a/uploader/expression_data/index.py +++ b/uploader/expression_data/index.py @@ -12,8 +12,7 @@ from flask import ( redirect, Blueprint, render_template, - current_app as app, - send_from_directory) + current_app as app) from uploader.db import species from uploader.authorisation import require_login |