diff options
| author | Shepherd on Tux02 | 2024-11-22 05:00:03 -0600 |
|---|---|---|
| committer | Shepherd on Tux02 | 2024-11-22 05:00:03 -0600 |
| commit | c24d16e979c95af586328baa7a4ab131b68da60a (patch) | |
| tree | b97b29863fbfccc29c5851a6f3d4670b75f40e28 | |
| parent | 4828accd5b4cd62ae66fd4845e1768b170225c1e (diff) | |
| download | gn-shepherd-services-c24d16e979c95af586328baa7a4ab131b68da60a.tar.gz | |
Modernize guix invocation with shell - it is broken still
| -rwxr-xr-x | run_singlecell.sh | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/run_singlecell.sh b/run_singlecell.sh index 3c615b8..10f9b31 100755 --- a/run_singlecell.sh +++ b/run_singlecell.sh @@ -1,3 +1,6 @@ #!/bin/sh -/home/shepherd/guix-profiles/singlecell/bin/guix download https://bioconductor.org/packages/3.11/bioc/src/contrib/multtest_2.44.0.tar.gz -/home/shepherd/guix-profiles/singlecell/bin/guix environment --ad-hoc singlecellrshiny -- sh -c 'R_LIBS_USER=$GUIX_ENVIRONMENT/site-library/ singlecellrshiny' +# /home/shepherd/guix-profiles/singlecell/bin/guix download https://bioconductor.org/packages/3.11/bioc/src/contrib/multtest_2.44.0.tar.gz +# /home/shepherd/guix-profiles/singlecell/bin/guix environment --ad-hoc singlecellrshiny -- sh -c 'R_LIBS_USER=$GUIX_ENVIRONMENT/site-library/ singlecellrshiny' + +/home/wrk/opt/guix-pull-5-link/bin/guix shell singlecellrshiny -- sh -c 'R_LIBS_USER=$GUIX_ENVIRONMENT/site-library/ singlecellrshiny' + |