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authorMunyoki Kilyungi2024-02-19 23:20:22 +0300
committerBonfaceKilz2024-03-26 10:01:13 +0300
commit9f8d47ebf43ee12682842178c6fbc4f9529c5130 (patch)
treed32294af5893575d0db072a284d093034e8a326e
parente88e4add3cbb13fcaeacb9bed925e18abaf030f3 (diff)
downloadgenenetwork2-9f8d47ebf43ee12682842178c6fbc4f9529c5130.tar.gz
Rename "required_access" to "required_trait_access".
* gn2/wqflask/decorators.py (required_access): Rename this to ... (required_trait_access): ... this. * gn2/wqflask/metadata_edits.py: Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
-rw-r--r--gn2/wqflask/decorators.py2
-rw-r--r--gn2/wqflask/metadata_edits.py14
2 files changed, 8 insertions, 8 deletions
diff --git a/gn2/wqflask/decorators.py b/gn2/wqflask/decorators.py
index 848f03ec..e4fb31ff 100644
--- a/gn2/wqflask/decorators.py
+++ b/gn2/wqflask/decorators.py
@@ -62,7 +62,7 @@ class AuthorisationError(Exception):
self.user = user
super().__init__(self, description, user)
-def required_access(access_levels: tuple[str, ...],
+def required_trait_access(access_levels: tuple[str, ...],
dataset_key: str = "dataset_name",
trait_key: str = "name") -> Callable:
def __build_access_checker__(func: Callable):
diff --git a/gn2/wqflask/metadata_edits.py b/gn2/wqflask/metadata_edits.py
index 6bcbd648..16ba2e3a 100644
--- a/gn2/wqflask/metadata_edits.py
+++ b/gn2/wqflask/metadata_edits.py
@@ -26,7 +26,7 @@ from gn2.utility.json import CustomJSONEncoder
from gn2.wqflask.database import database_connection
from gn2.wqflask.decorators import login_required
-from gn2.wqflask.decorators import required_access
+from gn2.wqflask.decorators import required_trait_access
from gn2.wqflask.decorators import edit_admins_access_required
from gn2.wqflask.oauth2 import client
@@ -111,7 +111,7 @@ def edit_phenotype(conn, name, dataset_id):
@metadata_edit.route("/<dataset_id>/traits/<name>")
@login_required(pagename="phenotype edit")
-@required_access(
+@required_trait_access(
("group:resource:view-resource", "group:resource:edit-resource"))
def display_phenotype_metadata(dataset_id: str, name: str):
from gn2.utility.tools import get_setting
@@ -139,7 +139,7 @@ def display_phenotype_metadata(dataset_id: str, name: str):
@metadata_edit.route("/traits/<name>")
-@required_access(
+@required_trait_access(
("group:resource:view-resource", "group:resource:edit-resource"))
def display_probeset_metadata(name: str):
from gn2.utility.tools import get_setting
@@ -167,7 +167,7 @@ def display_probeset_metadata(name: str):
@metadata_edit.route("/<dataset_id>/traits/<name>", methods=("POST",))
@login_required(pagename="phenotype update")
-@required_access(
+@required_trait_access(
("group:resource:view-resource", "group:resource:edit-resource"))
def update_phenotype(dataset_id: str, name: str):
from gn2.utility.tools import get_setting
@@ -385,7 +385,7 @@ View the diffs <a href='{url}' target='_blank'>here</a>", "success")
@metadata_edit.route("/traits/<name>", methods=("POST",))
-@required_access(
+@required_trait_access(
("group:resource:view-resource", "group:resource:edit-resource"),
dataset_key="dataset_id", trait_key="name")
def update_probeset(name: str):
@@ -788,7 +788,7 @@ def __authorised_p__(dataset_name, trait_name):
@metadata_edit.route("<resource_id>/diffs/<file_name>/reject")
@login_required(pagename="sample data rejection")
-@required_access(
+@required_trait_access(
("group:resource:view-resource", "group:resource:edit-resource"),
trait_key="trait_name")
def reject_data(resource_id: str, file_name: str):
@@ -815,7 +815,7 @@ def reject_data(resource_id: str, file_name: str):
@metadata_edit.route("<resource_id>/diffs/<file_name>/approve")
@login_required(pagename="Sample Data Approval")
-@required_access(
+@required_trait_access(
("group:resource:view-resource", "group:resource:edit-resource"),
trait_key="trait_name")
def approve_data(resource_id: str, file_name: str):