about summary refs log tree commit diff
diff options
context:
space:
mode:
authorDannyArends2017-03-04 10:50:03 +0100
committerDannyArends2017-03-04 10:50:03 +0100
commit1d1c7dd0b4a186df6d71ea7b2859e8ea9b12d38e (patch)
treea8b3b17d0e112cdfa77675780bd976597f030695
parente729dfe1c3f984d83d5ec6f5760a961fbb74babe (diff)
downloadgenenetwork2-1d1c7dd0b4a186df6d71ea7b2859e8ea9b12d38e.tar.gz
Minor update to the comments
-rw-r--r--wqflask/wqflask/auwerx/phewas_analysis.py3
1 files changed, 1 insertions, 2 deletions
diff --git a/wqflask/wqflask/auwerx/phewas_analysis.py b/wqflask/wqflask/auwerx/phewas_analysis.py
index b9789404..e9455fba 100644
--- a/wqflask/wqflask/auwerx/phewas_analysis.py
+++ b/wqflask/wqflask/auwerx/phewas_analysis.py
@@ -31,7 +31,7 @@ r_load          = ro.r["load"]                # Map the head function
 r_colnames      = ro.r["colnames"]            # Map the colnames function
 r_list          = ro.r["list"]                # Map the list function
 r_c             = ro.r["c"]                   # Map the c (combine) function
-r_print         = ro.r["print"]               # Map the c (combine) function
+r_print         = ro.r["print"]               # Map the print function
 r_seq           = ro.r["seq"]                 # Map the rep (repeat) function
 
 class PheWAS(object):
@@ -86,7 +86,6 @@ class PheWAS(object):
         rnames = r_seq(1, len(parser.markers))
         # Create the snp aligner object out of the BXD genotypes
         snpaligner = ro.r.matrix(snpinfo, nrow=len(parser.markers), dimnames = r_list(rnames, r_c("SNP", "Chr", "Pos")), ncol = 3, byrow=True)
-        #r_write_table(snpaligner, "~/snpaligner_GN2.txt", row_names=False)
 
         # Create the phenotype aligner object using R
         phenoaligner = self.r_create_Pheno_aligner()