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authorDannyArends2017-03-04 10:50:03 +0100
committerDannyArends2017-03-04 10:50:03 +0100
commit1d1c7dd0b4a186df6d71ea7b2859e8ea9b12d38e (patch)
treea8b3b17d0e112cdfa77675780bd976597f030695
parente729dfe1c3f984d83d5ec6f5760a961fbb74babe (diff)
downloadgenenetwork2-1d1c7dd0b4a186df6d71ea7b2859e8ea9b12d38e.tar.gz
Minor update to the comments
-rw-r--r--wqflask/wqflask/auwerx/phewas_analysis.py3
1 files changed, 1 insertions, 2 deletions
diff --git a/wqflask/wqflask/auwerx/phewas_analysis.py b/wqflask/wqflask/auwerx/phewas_analysis.py
index b9789404..e9455fba 100644
--- a/wqflask/wqflask/auwerx/phewas_analysis.py
+++ b/wqflask/wqflask/auwerx/phewas_analysis.py
@@ -31,7 +31,7 @@ r_load = ro.r["load"] # Map the head function
r_colnames = ro.r["colnames"] # Map the colnames function
r_list = ro.r["list"] # Map the list function
r_c = ro.r["c"] # Map the c (combine) function
-r_print = ro.r["print"] # Map the c (combine) function
+r_print = ro.r["print"] # Map the print function
r_seq = ro.r["seq"] # Map the rep (repeat) function
class PheWAS(object):
@@ -86,7 +86,6 @@ class PheWAS(object):
rnames = r_seq(1, len(parser.markers))
# Create the snp aligner object out of the BXD genotypes
snpaligner = ro.r.matrix(snpinfo, nrow=len(parser.markers), dimnames = r_list(rnames, r_c("SNP", "Chr", "Pos")), ncol = 3, byrow=True)
- #r_write_table(snpaligner, "~/snpaligner_GN2.txt", row_names=False)
# Create the phenotype aligner object using R
phenoaligner = self.r_create_Pheno_aligner()