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fix #79; bump version

master
Artem Tarasov 7 years ago
parent
commit
16e8d3d820
  1. 16
      .drone.yml
  2. 2
      BioD
  3. 9
      deb/DEBIAN_CHANGELOG
  4. 4
      main.d

16
.drone.yml

@ -1,16 +0,0 @@
image: lomereiter/centos5-ldc2-minimal
env:
ACCESS_TOKEN={{dropbox_token}}
script:
- git submodule update --init
- make sambamba-ldmd2-64
- curl -L "https://dl.dropboxusercontent.com/u/7916095/shunit2-2.0.3.tgz" | tar zx
- ./.run_tests.sh
deploy:
bash:
script:
- chmod +x .dropbox.sh
- cd build
- ../.dropbox.sh sambamba

2
BioD

@ -1 +1 @@
Subproject commit b6819181129759aec495f8fc64f518ed3777e70d
Subproject commit 58c15503d418ce1d87b347ad7d37881a99b7fbd8

9
deb/DEBIAN_CHANGELOG

@ -1,3 +1,12 @@
sambamba (0.4.7) unstable, urgency=low
* use random subdirectories for temporary files in both sort and markdup utilities
(allows to run multiple processes in parallel)
* fixed bug in slice tool: when slicing last reference, unmapped reads were written too
* fixed a bug in uncompressed BAM output
* fixed a bug in intersecting with BED
-- Artem Tarasov <lomereiter@gmail.com> Fri, 20 Jun 2014 16:27:19 +0400
sambamba (0.4.6) unstable, urgency=low
* fixed a bug in duplicate marking tool
* fixed handling empty BAM files in sort tool

4
main.d

@ -1,6 +1,6 @@
/*
This file is part of Sambamba.
Copyright (C) 2012-2013 Artem Tarasov <lomereiter@gmail.com>
Copyright (C) 2012-2014 Artem Tarasov <lomereiter@gmail.com>
Sambamba is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@ -30,7 +30,7 @@ import sambamba.utils.common.ldc_gc_workaround;
import std.stdio;
void printUsage() {
stderr.writeln("sambamba v0.4.6");
stderr.writeln("sambamba v0.4.7");
stderr.writeln();
stderr.writeln("Usage: sambamba [command] [args...]");
stderr.writeln();

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