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Remove stuff that is in trunk

master
pjotrp 10 months ago
parent
commit
934d282cfb
  1. 42
      gn/packages/book_evolutionary_genomics.scm

42
gn/packages/book_evolutionary_genomics.scm

@ -10,7 +10,6 @@
#:use-module (guix build-system cmake)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
;; #:use-module (guix build-system ruby)
#:use-module (guix build-system r)
#:use-module (guix build-system trivial)
@ -18,11 +17,7 @@
#:use-module (gnu packages base)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages compression)
; #:use-module (gnu packages gcc)
; #:use-module (gnu packages graphviz)
; #:use-module (gnu packages java)
; #:use-module (gnu packages linux)
; #:use-module (gnu packages ldc)
#:use-module (gnu packages cran)
#:use-module (gnu packages libffi)
#:use-module (gnu packages perl)
#:use-module (gnu packages python)
@ -30,14 +25,11 @@
#:use-module (gnu packages statistics)
#:use-module (gnu packages tls)
#:use-module (gnu packages vim)
; #:use-module (gnu packages web)
; #:use-module (gnu packages xml)
#:use-module (gnu packages version-control)
#:use-module (gn packages bioinformatics)
#:use-module (gn packages javascript)
#:use-module (gn packages python)
; #:use-module (gn packages statistics)
#:use-module (srfi srfi-1))
(define-public r-gener ;; poor implementation
@ -81,36 +73,6 @@
".")
(license license:expat))) ; CeCILL-2.0
(define-public r-rserve
(package
(name "r-rserve")
(version "1.8-4")
(source
(origin
(method url-fetch)
(uri "https://github.com/s-u/Rserve/releases/download/1.8-4/Rserve_1.8-4.tar.gz")
(sha256
(base32
"1dncwiyhy1s1pimb6f2dzs3ivahah5id3chw4r10j92754bxmrn2"))))
(propagated-inputs
`(("r" ,r)))
(inputs `(("zlib" ,zlib)
("openssl" ,openssl)))
(build-system r-build-system)
(home-page "https://github.com/s-u/Rserve")
(synopsis "Fast, flexible and powerful server providing access to R from many languages and systems http://RForge.net/Rserve")
(description
"Rserve acts as a socket server (TCP/IP or local sockets) which
allows binary requests to be sent to R. Every connection has a
separate workspace and working directory. Client-side implementations
are available for popular languages such as C/C++ and Java, allowing
any application to use facilities of R without the need of linking to
R code. Rserve supports remote connection, user authentication and
file transfer. A simple R client is included in this package as
well.")
(license license:gpl2)))
(define-public book-evolutionary-genomics
(let ((commit "53a7aefefcedd52b94b38195f8daae94c07d89db"))
(package
@ -131,7 +93,7 @@ well.")
(propagated-inputs
`(("python" ,python)
("python-biopython" ,python-biopython)
("python-rserve" ,python-rserve)
; ("python-rserve" ,python-rserve)
("r" ,r)
("r-gener" ,r-gener)
("r-biostrings" ,r-biostrings)

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