biod/RELEASE-NOTES.md

ChangeLog v0.2.3 (20191119)

• Compiles and tests pass on Debian with dub and ldc 1.17.0

ChangeLog v0.2.2 (20190316)

• Restored make so we can compile without dub
• Fasta and fasta indexing (.fai) support added (thanks Emilio Palumbo https://github.com/emi80)
• Mate pair comparison and HI tag support added for BAM (thanks https://github.com/emi80)
• Added Picard-style comparison for BAM (thanks https://github.com/TimurIs)
• Added fast whitespace line splitter/tokenizer, a Phobos-style version and a faster C-style version (thanks https://github.com/pjotrp)
• Added multi-allelic frequencies (MAF) support (thanks https://github.com/pjotrp)
• Name spaces and directories reorganised (thanks George Gethinji https://github.com/george-githinji)
• Pulled in D's undead repo (dropped dependency) and minimalised it to actual used files (@pjotrp)

ChangeLog v0.2.1 (20181004)

• Fix bunch of deprecation warnings
• Fixes sort removing tags from @RG header https://github.com/biod/sambamba/issues/356
• Fixes https://github.com/biod/BioD/issues/37

ChangeLog v0.2.0 (20180915)

64-bit compilation should be fine on ldc 1.10

• Added FastQ parser (thanks George Githinji @george-githinji)
• Added rewritten Bamreader f4a6c1c55c (thanks Pjotr Prins @pjotrp)
• Improved big-endian support and other bug fixes (thanks Artem Tarasov @lomereiter)
• Include SAM/BAM AH tag (thanks Indraniel Das @indraniel)
• D undeaD compilation fixes (thanks John Colvin @John-Colvin)
• Meson build definition added (thanks Matthias Klumpp @ximion)
• Update outputstream.d (thanks Brett T. Hannigan @godotgildor)
• Moved Cigar into its own module 7994406592
• Added 'asserte' method which throws an exception on assert (failure)
• Bug fixes:
  • #31 Bug in bio/core/utils/outbuffer.d: _heap.length is not correctly set affects reading long SAM records
  • https://github.com/biod/sambamba/issues/210 correct pseudo-bin calculation (thanks @jfarek)
  • JSON header output fixes #331