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lomereiter 5f591d8786 fix 10 years ago
bio fix 10 years ago
examples added another example on pileup 10 years ago
src_ragel renamings: next_ref_id -> mate_ref_id, next_pos -> mate_position 10 years ago
test added PerBaseInfo.constructFront method 10 years ago
LICENSE license 10 years ago
README.md Create README.md 10 years ago

README.md

BioD

Library goals are:

  • Support for most common formats of biological data
  • Fast and low-memory processing, that includes:
    • Automatic parallelization where possible (e.g. BAM reading/writing)
    • Avoiding unnecessary allocations to reduce GC overhead
    • Spending hours with profiler to optimize hot paths ;-)
  • Clear, documented, and maintainable codebase
  • Being suitable for one-off scripts, comparable in size with those written in Python/Ruby/Perl
  • Providing a platform for writing high-performance bioinformatics applications in D