## ChangeLog v0.2.3 (20191119) + Compiles and tests pass on Debian with dub and ldc 1.17.0 ## ChangeLog v0.2.2 (20190316) + Restored make so we can compile without dub + Fasta and fasta indexing (.fai) support added (thanks Emilio Palumbo https://github.com/emi80) + Mate pair comparison and HI tag support added for BAM (thanks https://github.com/emi80) + Added Picard-style comparison for BAM (thanks https://github.com/TimurIs) + Added fast whitespace line splitter/tokenizer, a Phobos-style version and a faster C-style version (thanks https://github.com/pjotrp) + Added multi-allelic frequencies (MAF) support (thanks https://github.com/pjotrp) + Name spaces and directories reorganised (thanks George Gethinji https://github.com/george-githinji) + Pulled in D's undead repo (dropped dependency) and minimalised it to actual used files (@pjotrp) ## ChangeLog v0.2.1 (20181004) + Fix bunch of deprecation warnings + Fixes sort removing tags from @RG header https://github.com/biod/sambamba/issues/356 + Fixes https://github.com/biod/BioD/issues/37 ## ChangeLog v0.2.0 (20180915) 64-bit compilation should be fine on ldc 1.10 + Added FastQ parser (thanks George Githinji @george-githinji) + Added rewritten Bamreader f4a6c1c55c8903e948b793adbb150704d1e267b2 (thanks Pjotr Prins @pjotrp) + Improved big-endian support and other bug fixes (thanks Artem Tarasov @lomereiter) + Include SAM/BAM AH tag (thanks Indraniel Das @indraniel) + D undeaD compilation fixes (thanks John Colvin @John-Colvin) + Meson build definition added (thanks Matthias Klumpp @ximion) + Update outputstream.d (thanks Brett T. Hannigan @godotgildor) + Moved Cigar into its own module 7994406592f277bc6950739aaf75c5f948cb7928 + Added 'asserte' method which throws an exception on assert (failure) + Bug fixes: * #31 Bug in bio/core/utils/outbuffer.d: _heap.length is not correctly set affects reading long SAM records * https://github.com/biod/sambamba/issues/210 correct pseudo-bin calculation (thanks @jfarek) * JSON header output fixes #331