Commit Graph

  • 9844240ba4 Fix merge master Pjotr Prins 2019-11-29 10:41:26 -0600
  • 7969eb0a84 Fix conflicts Pjotr Prins 2019-11-28 12:26:32 -0600
  • 6088ca4ddf Version bump and release notes Pjotr Prins 2019-11-28 12:24:04 -0600
  • 3f89719cb0 A bunch of changes to fix https://github.com/biod/sambamba/issues/393 Pjotr Prins 2019-11-28 12:00:00 -0600
  • 589cd69c15 Segfault sorted segfaults Pjotr Prins 2019-11-28 15:34:10 +0000
  • bc8b0d059e Fixed segfault Pjotr Prins 2019-11-28 07:27:42 -0600
  • a0614cb829 Fixed segfault Pjotr Prins 2019-11-28 07:27:00 -0600
  • 9b59462093 Enable unittests and comments Pjotr Prins 2019-11-28 06:43:46 -0600
  • 5218ecbf64 Roundbuf: comments Pjotr Prins 2019-11-28 06:42:46 -0600
  • 1a2383cde6 Fixes buffer offsets Pjotr Prins 2019-11-27 09:33:39 -0600
  • fd1e8281f1 Cache Pjotr Prins 2019-11-26 08:35:02 -0600
  • 27a2d37852 Removed cache Pjotr Prins 2019-11-25 06:09:33 -0600
  • 2e18442602 Before disabling cache Pjotr Prins 2019-11-25 05:59:15 -0600
  • 74a12056ee make check will segfault most times with this minimal code Pjotr Prins 2019-11-24 04:05:29 -0600
  • 6b9fa8989b segfault Pjotr Prins 2019-11-23 15:26:52 -0600
  • 921bb2c7c8 segfault Pjotr Prins 2019-11-23 15:26:35 -0600
  • f5585d7dbf segfault Pjotr Prins 2019-11-23 15:25:51 -0600
  • a2bc048bec segfault Pjotr Prins 2019-11-23 15:16:10 -0600
  • d114fdcac6 segfault Pjotr Prins 2019-11-23 15:14:59 -0600
  • 763c9aee77 segfault Pjotr Prins 2019-11-23 15:13:05 -0600
  • 90b90e0e54 segfault Pjotr Prins 2019-11-23 15:09:17 -0600
  • 930ea715a7 segfault Pjotr Prins 2019-11-23 15:07:13 -0600
  • 1f96c99bfd segfault Pjotr Prins 2019-11-23 15:06:38 -0600
  • be7f7f44d8 segfault Pjotr Prins 2019-11-23 15:06:01 -0600
  • 12d6bed5e5 segfault Pjotr Prins 2019-11-23 15:04:53 -0600
  • ffb1eb2f38 segfault Pjotr Prins 2019-11-23 15:03:49 -0600
  • ffc1890af4 segfault Pjotr Prins 2019-11-23 15:03:34 -0600
  • 68e197cd05 Segfaults Pjotr Prins 2019-11-23 14:52:28 -0600
  • 8040b4f5c2 Adding test Pjotr Prins 2019-11-23 14:19:35 -0600
  • b8eecef40f Remove main() in unittests for dub pjotrp/master origin/master origin/HEAD Pjotr Prins 2019-11-20 02:08:22 -0600
  • c9a165ec65 Fix merge Pjotr Prins 2019-11-19 12:14:39 -0600
  • 1804ee35a6 Tests pass when garbage collection is disabled Pjotr Prins 2019-11-19 12:09:37 -0600
  • df4cd3b86a Adding support for building sharedlibrary in make file Pjotr Prins 2019-11-19 11:18:17 -0600
  • d2cb603b56 Bringing unittests back in Pjotr Prins 2019-11-19 16:21:56 +0000
  • 24b693914c Make shared library default output for dub Pjotr Prins 2019-11-19 16:09:16 +0000
  • 759a00fb53 Release 0.2.3 Pjotr Prins 2019-11-19 04:58:23 -0600
  • 20809292fb Fixes to build with Makefile and dub on Debian with Pjotr Prins 2019-11-19 04:56:22 -0600
  • ff90377289 debugging pjotrp/issue393 Pjotr Prins 2019-06-03 14:23:59 -0500
  • 418ab75da1 dub.json: fixes Pjotr Prins 2019-06-01 09:48:59 -0500
  • 57b33c1e44 README: minor fixes Pjotr Prins 2019-06-01 09:47:47 -0500
  • 2194ba718d Makefile: use -main flag for test binary only Pjotr Prins 2019-06-01 08:23:47 -0500
  • 0d06e291b0 Release 0.2.2 Pjotr Prins 2019-03-16 15:42:58 +0000
  • 63b6d1ea26 Makefile: compile all files. make check passes with ldc 1.14.0! Pjotr Prins 2019-03-16 14:50:37 +0000
  • 0f4c3554a6 dub.json: added Emilio and fixed spacing Pjotr Prins 2019-03-16 14:37:53 +0000
  • f0f5b68f08 README: added guix environment instructions without dub Pjotr Prins 2019-03-16 14:33:36 +0000
  • da5a463e08 Fixed Makefile with ldc 1.14 Pjotr Prins 2019-03-16 14:32:58 +0000
  • 83eb863256
    Merge pull request #52 from ayys/master Pjotr Prins 2019-03-09 07:40:12 -0600
  • 13c41c6124 Add comments to describe the flags in experimental/hts/bam/reader.d Ayush Jha 2019-03-09 12:38:47 +0545
  • 23be373986
    Merge pull request #51 from emi80/master George 2019-02-04 22:50:32 +0300
  • 8b3b2c8f15 Fix undead unti test Emilio Palumbo 2019-02-04 17:46:12 +0100
  • bf02aa87d1 Fix module definition and import Emilio Palumbo 2019-02-04 17:36:11 +0100
  • bac9fbe48d Add license and copyright disclaimer Emilio Palumbo 2019-02-04 17:07:13 +0100
  • 7d70c82ca8 Add code for FASTA reading, indexing and writing Emilio Palumbo 2019-02-04 17:00:36 +0100
  • e62358e00c BioD path fixes Pjotr Prins 2018-12-25 08:45:05 +0000
  • 28ed6e382e BioD path fixes Pjotr Prins 2018-12-25 08:32:29 +0000
  • 43ed6a954a BioD path fixes Pjotr Prins 2018-12-25 08:25:10 +0000
  • 650c37745e undead import fix Pjotr Prins 2018-12-25 08:13:53 +0000
  • a79ae9713d Added license info for included undeaD code Pjotr Prins 2018-12-25 08:12:38 +0000
  • 567edc1c98 Added undead.cstream: sambamba strip_bcf_header.d still uses it Pjotr Prins 2018-12-25 08:07:24 +0000
  • f9d3e8633e README: maintainers and license update sambamba Pjotr Prins 2018-12-25 07:32:32 +0000
  • dd17e63ad0 README: reformat, updated instructions Pjotr Prins 2018-12-25 07:30:58 +0000
  • 1544465ec5 Merge branch 'sambamba' of github.com:biod/BioD into sambamba Pjotr Prins 2018-12-25 07:24:18 +0000
  • 47f43f1060
    Merge pull request #49 from emi80/sambamba origin/sambamba Pjotr Prins 2018-12-21 07:57:32 +0000
  • 54c2a3868c Add comparator for mates and HI tag Emilio Palumbo 2018-12-20 14:25:15 +0100
  • 3c74763177
    Merge pull request #48 from george-githinji/master Pjotr Prins 2018-12-04 23:50:49 +0000
  • aece50c139 made a few corrections on the readme George Githinji 2018-12-03 11:20:21 +0300
  • d7b79b1fbc fixed with proper undead import path George Githinji 2018-12-03 11:08:45 +0300
  • b96a421ba3 fixed errors in undead import paths George Githinji 2018-12-03 11:08:13 +0300
  • 8e8e58ca45 qualifiedthe undead module names with proper namespace George Githinji 2018-12-03 11:07:10 +0300
  • 715d3b1696 fixed typo George Githinji 2018-12-03 11:06:02 +0300
  • 10f55b3335 fixed typo in names. Revised description. Fixed source and import path George Githinji 2018-12-03 10:25:05 +0300
  • ea9a36d5fc fix undead import dir George Githinji 2018-12-02 10:13:10 +0300
  • 559808c80f dont dig too deep to find the undead George Githinji 2018-12-02 07:34:04 +0300
  • 1095702301 Fix dub tests Pjotr Prins 2018-12-01 10:24:30 +0000
  • 7cf28d040b Fixing dub build Pjotr Prins 2018-12-01 10:09:28 +0000
  • 810c56a4c4 Undead: only introduced files that are called georgeg Pjotr Prins 2018-12-01 09:41:40 +0000
  • 8eab3654e4 Moving used undead files into contrib/ Pjotr Prins 2018-12-01 09:31:07 +0000
  • be14b238eb Updating Pjotr Prins 2018-12-01 09:29:47 +0000
  • 1f56d94203 Fix conflicts Pjotr Prins 2018-12-01 09:16:54 +0000
  • a30e057e39 README Pjotr Prins 2018-12-01 09:13:36 +0000
  • 59ed27e1b3 focus on why BioD. this is not just about D. georgeg/master George Githinji 2018-11-30 15:28:09 +0300
  • e27a224f3e correct typo George Githinji 2018-11-29 19:51:16 +0300
  • 792e900304 updated readme George Githinji 2018-11-29 19:26:02 +0300
  • fd3b09e867 updated the decompression.d George Githinji 2018-11-28 18:10:48 +0300
  • 0ed850c59a updated std.genotype and created experimental.file George Githinji 2018-11-28 18:05:58 +0300
  • 2d1d207b91 added new hierachies for std.experimental. Fixed names module imports in the new std.experimental.hts George Githinji 2018-11-28 17:38:17 +0300
  • 0d7f5b11e9 fix the examples to use the new namespaces George Githinji 2018-11-28 16:52:23 +0300
  • d8c3067515 fix namespace imports George Githinji 2018-11-28 16:51:10 +0300
  • c3c2a81839 fix the module imports for test George Githinji 2018-11-28 15:27:57 +0300
  • 511d5c0079 add undead. undead will eventually be removed from BioD George Githinji 2018-11-28 15:27:17 +0300
  • 625b9b93fa fix module import paths George Githinji 2018-11-28 15:26:16 +0300
  • cdc728852d Splitter Pjotr Prins 2018-11-28 09:20:49 +0000
  • 8981178af4 Splitter even faster Pjotr Prins 2018-11-28 09:15:21 +0000
  • 8baa31263b Splitter: second rewrite Pjotr Prins 2018-11-28 08:41:57 +0000
  • 4bac3c5e45 Splitter: first rewrite Pjotr Prins 2018-11-28 08:38:59 +0000
  • da9b0b958a Started optimizing tokenizer/splitter Pjotr Prins 2018-11-28 08:10:12 +0000
  • 641157ac6a resize markdown headings George Githinji 2018-11-28 08:55:23 +0300
  • 1ff6d86398 rephrase sentences George Githinji 2018-11-28 04:49:40 +0300
  • 2e54a4d955 add clarity to the readme George Githinji 2018-11-27 22:34:43 +0300
  • 89c709d9bb restructured sentences George Githinji 2018-11-27 22:19:24 +0300