35 Commits (df4cd3b86a93efe4a578fbd7973520e807ad1de8)

Author SHA1 Message Date
Pjotr Prins df4cd3b86a Adding support for building sharedlibrary in make file 3 years ago
Pjotr Prins d2cb603b56 Bringing unittests back in 3 years ago
George Githinji c3c2a81839 fix the module imports for test 4 years ago
George Githinji 7deab8abd4 backup the old directory and module structure 4 years ago
Matthias Klumpp 643b454f04 trivial: Fix unittests 4 years ago
Pjotr Prins bfeef2bfa8 Getting rid of unittest noise 5 years ago
Pjotr Prins 576c0793bf All unittest output on stderr 5 years ago
John Colvin c37b0e7e03 switch to undead.stream; 6 years ago
Artem Tarasov 93ac39e25b fix compression buffer size 7 years ago
Artem Tarasov 2765f2f5d1 fixes here and there 8 years ago
Artem Tarasov f88fe6479d fix unittests to compile with LDC 9 years ago
lomereiter 1560f69119 faster BAM reading 9 years ago
lomereiter 52d0ae3ce7 better SAM parser 9 years ago
lomereiter 57c81f275f changed license to MIT 9 years ago
lomereiter 32fb5a45a4 new BamRead method: extended_cigar 9 years ago
lomereiter 73da46c93e new awesome serialization to sam/json 10 years ago
lomereiter 2ecabe69c5 fixes in Value.toString 10 years ago
lomereiter bf12b493f4 implemented idiomatic toString for BamRead 10 years ago
lomereiter 81909e480c unittests pass on 2.061 10 years ago
lomereiter 7bd9a276a0 added PerBaseInfo.constructFront method 10 years ago
lomereiter 61e9ae13c1 split mdExtra into mdCurrentOp, mdNextOp, mdPreviousOp 10 years ago
lomereiter 7847d19753 added Option.mdExtra to basesWith 10 years ago
lomereiter aaddb9333c support for options in basesWith 10 years ago
lomereiter 852c1b62e6 fixed unittests by adding opEquals to PerBaseInfo.Result 10 years ago
lomereiter 8907b118ed renamed module pileuprange to pileup 10 years ago
lomereiter ec2c9aeb0c basesWith: MD tag 10 years ago
lomereiter f4984db147 renames: writeRead -> writeRecord; phred_base_quality -> base_qualities 10 years ago
lomereiter 2fadd7f1ff new BamWriter class; bio.bam.output is deprecated 10 years ago
lomereiter d38d2b17da bgzf input/output streams 10 years ago
lomereiter 9218e12a38 moved BGZF-related code to bio.core.bgzf 10 years ago
lomereiter 5ef136fc9d renamed read_name to name 10 years ago
lomereiter ec3dc0986b changes in basesWith behaviour 10 years ago
lomereiter c37567fee0 renamed Sam/BamFile to Sam/BamReader and made them classes 10 years ago
lomereiter da9824be96 make unittests compile with -property 10 years ago
lomereiter a1dcb7075e initial commit 10 years ago