22 Commits (9143bf697889519334f9c72031b382fa22d7d862)

Author SHA1 Message Date
lomereiter 73da46c93e new awesome serialization to sam/json 9 years ago
lomereiter 2ecabe69c5 fixes in Value.toString 9 years ago
lomereiter bf12b493f4 implemented idiomatic toString for BamRead 9 years ago
lomereiter 81909e480c unittests pass on 2.061 9 years ago
lomereiter 7bd9a276a0 added PerBaseInfo.constructFront method 9 years ago
lomereiter 61e9ae13c1 split mdExtra into mdCurrentOp, mdNextOp, mdPreviousOp 9 years ago
lomereiter 7847d19753 added Option.mdExtra to basesWith 9 years ago
lomereiter aaddb9333c support for options in basesWith 9 years ago
lomereiter 852c1b62e6 fixed unittests by adding opEquals to PerBaseInfo.Result 9 years ago
lomereiter 8907b118ed renamed module pileuprange to pileup 9 years ago
lomereiter ec2c9aeb0c basesWith: MD tag 9 years ago
lomereiter f4984db147 renames: writeRead -> writeRecord; phred_base_quality -> base_qualities 9 years ago
lomereiter 2fadd7f1ff new BamWriter class; bio.bam.output is deprecated 9 years ago
lomereiter d38d2b17da bgzf input/output streams 9 years ago
lomereiter 9218e12a38 moved BGZF-related code to bio.core.bgzf 9 years ago
lomereiter b3f2466d46 fixes; example of iterating several datasets 9 years ago
lomereiter 141596884c fixed a bug in baseinfo.d; added another example 9 years ago
lomereiter 5ef136fc9d renamed read_name to name 9 years ago
lomereiter ec3dc0986b changes in basesWith behaviour 9 years ago
lomereiter c37567fee0 renamed Sam/BamFile to Sam/BamReader and made them classes 9 years ago
lomereiter da9824be96 make unittests compile with -property 9 years ago
lomereiter a1dcb7075e initial commit 9 years ago