84 Commits (9143bf697889519334f9c72031b382fa22d7d862)
 

Author SHA1 Message Date
lomereiter 9143bf6978 updated example 6 9 years ago
lomereiter 73da46c93e new awesome serialization to sam/json 9 years ago
lomereiter d973b805c0 throw exceptions in case of file reading problems 9 years ago
lomereiter 996e4b1a3b fix const in json serialization 9 years ago
lomereiter 35e48e197f EAGAIN/EWOULDBLOCK handling 9 years ago
lomereiter 02ad9dff11 faster BamRead.toString 9 years ago
lomereiter 2ecabe69c5 fixes in Value.toString 9 years ago
lomereiter bf12b493f4 implemented idiomatic toString for BamRead 9 years ago
lomereiter 515f9718ea bio.bam.reader docs: intro with examples 9 years ago
lomereiter ee7fbab192 further documentation improvements 9 years ago
lomereiter 24474ac73b improving docs... 9 years ago
lomereiter ef648ee005 improved bio.bam.writer and bio.bam.pileup docs 9 years ago
lomereiter c04c314104 improved bio.bam.reader docs 9 years ago
lomereiter ae35f201c1 2.062 regression workaround =\ 9 years ago
lomereiter 8b633de229 more const 9 years ago
lomereiter bb870b760a readme 9 years ago
lomereiter 81909e480c unittests pass on 2.061 9 years ago
lomereiter 48675619e2 report range violations in flowcall.d 9 years ago
lomereiter 9a79ba6eee support for ZM tag 9 years ago
lomereiter 5aba31cb42 2.061 is NOT yet supported due to regressions in compiler 9 years ago
lomereiter 534c2f349b fix compilation errors with 2.061 9 years ago
lomereiter 5f591d8786 fix 9 years ago
lomereiter 4758c0595c allow underscore; fix distance calculation 9 years ago
lomereiter 0483604596 store node dictionary; tree distance 9 years ago
lomereiter 0ab08e6dfd store parent node 9 years ago
lomereiter 6fdfe7c049 newick tree parser 9 years ago
lomereiter ab97d012d8 more caching in baseinfo.d 9 years ago
lomereiter 9d7351ea96 revert last commit 9 years ago
lomereiter c4eaadd3d3 simplified code in SequenceResult.opIndex 9 years ago
lomereiter 6262a37581 micro optimizations 9 years ago
lomereiter 7bd9a276a0 added PerBaseInfo.constructFront method 9 years ago
Artem Tarasov 0c32cde7b9 Create README.md 9 years ago
lomereiter 6bbc6f3a04 renamings: next_ref_id -> mate_ref_id, next_pos -> mate_position 9 years ago
lomereiter 61e9ae13c1 split mdExtra into mdCurrentOp, mdNextOp, mdPreviousOp 9 years ago
lomereiter 19d8d6c5cf added alias NucleotideSequence 9 years ago
lomereiter 7847d19753 added Option.mdExtra to basesWith 9 years ago
lomereiter fde3f8232f fixed bio.bam.md.reconstruct.dna 9 years ago
lomereiter aaddb9333c support for options in basesWith 9 years ago
lomereiter 852c1b62e6 fixed unittests by adding opEquals to PerBaseInfo.Result 9 years ago
lomereiter 2933818678 fixes 9 years ago
lomereiter 6dda861117 optional cigar_before/cigar_after in basesWith 9 years ago
lomereiter a9504b2d4d cache MD operation in basesWith iteration 9 years ago
lomereiter b7b1dcfe24 removed unnecessary debug statement 9 years ago
lomereiter 168052e154 added another example on pileup 9 years ago
lomereiter 8907b118ed renamed module pileuprange to pileup 9 years ago
lomereiter a7dd41f09c fix docs 9 years ago
lomereiter 9bcd8285ad updated example of using baseinfo module 9 years ago
lomereiter ec2c9aeb0c basesWith: MD tag 9 years ago
lomereiter 3232ed82ac fix comment 9 years ago
lomereiter a636e10641 . 9 years ago