Pjotr Prins
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57b33c1e44
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README: minor fixes
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3 years ago |
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Pjotr Prins
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2194ba718d
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Makefile: use -main flag for test binary only
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3 years ago |
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Pjotr Prins
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0d06e291b0
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Release 0.2.2
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3 years ago |
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Pjotr Prins
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63b6d1ea26
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Makefile: compile all files. make check passes with ldc 1.14.0!
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3 years ago |
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Pjotr Prins
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0f4c3554a6
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dub.json: added Emilio and fixed spacing
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3 years ago |
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Pjotr Prins
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f0f5b68f08
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README: added guix environment instructions without dub
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3 years ago |
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Pjotr Prins
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da5a463e08
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Fixed Makefile with ldc 1.14
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3 years ago |
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Pjotr Prins
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83eb863256
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Merge pull request #52 from ayys/master
Add comments to describe the flags in experimental/hts/bam/reader.d
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3 years ago |
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Ayush Jha
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13c41c6124
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Add comments to describe the flags in experimental/hts/bam/reader.d
Add comments based on the SAMv1 specification for the flags in the
Read_flag template
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3 years ago |
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George
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23be373986
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Merge pull request #51 from emi80/master
Add preliminary support for FASTA format
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4 years ago |
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Emilio Palumbo
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8b3b2c8f15
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Fix undead unti test
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4 years ago |
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Emilio Palumbo
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bf02aa87d1
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Fix module definition and import
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4 years ago |
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Emilio Palumbo
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bac9fbe48d
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Add license and copyright disclaimer
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4 years ago |
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Emilio Palumbo
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7d70c82ca8
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Add code for FASTA reading, indexing and writing
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4 years ago |
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Pjotr Prins
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e62358e00c
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BioD path fixes
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4 years ago |
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Pjotr Prins
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28ed6e382e
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BioD path fixes
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4 years ago |
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Pjotr Prins
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43ed6a954a
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BioD path fixes
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4 years ago |
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Pjotr Prins
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650c37745e
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undead import fix
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4 years ago |
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Pjotr Prins
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a79ae9713d
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Added license info for included undeaD code
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4 years ago |
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Pjotr Prins
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567edc1c98
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Added undead.cstream: sambamba strip_bcf_header.d still uses it
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4 years ago |
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Pjotr Prins
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f9d3e8633e
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README: maintainers and license update
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4 years ago |
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Pjotr Prins
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dd17e63ad0
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README: reformat, updated instructions
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4 years ago |
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Pjotr Prins
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1544465ec5
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Merge branch 'sambamba' of github.com:biod/BioD into sambamba
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4 years ago |
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Pjotr Prins
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47f43f1060
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Merge pull request #49 from emi80/sambamba
Add new comparator for mates and HI tag
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4 years ago |
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Emilio Palumbo
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54c2a3868c
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Add comparator for mates and HI tag
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4 years ago |
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Pjotr Prins
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3c74763177
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Merge pull request #48 from george-githinji/master
Fixes for contrib/undead.
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4 years ago |
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George Githinji
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aece50c139
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made a few corrections on the readme
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4 years ago |
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George Githinji
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d7b79b1fbc
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fixed with proper undead import path
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4 years ago |
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George Githinji
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b96a421ba3
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fixed errors in undead import paths
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4 years ago |
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George Githinji
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8e8e58ca45
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qualifiedthe undead module names with proper namespace
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4 years ago |
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George Githinji
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715d3b1696
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fixed typo
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4 years ago |
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George Githinji
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10f55b3335
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fixed typo in names. Revised description. Fixed source and import path
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4 years ago |
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George Githinji
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ea9a36d5fc
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fix undead import dir
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4 years ago |
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George Githinji
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559808c80f
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dont dig too deep to find the undead
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4 years ago |
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Pjotr Prins
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1095702301
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Fix dub tests
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4 years ago |
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Pjotr Prins
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7cf28d040b
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Fixing dub build
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4 years ago |
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Pjotr Prins
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810c56a4c4
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Undead: only introduced files that are called
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4 years ago |
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Pjotr Prins
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8eab3654e4
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Moving used undead files into contrib/
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4 years ago |
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Pjotr Prins
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be14b238eb
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Updating
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4 years ago |
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Pjotr Prins
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1f56d94203
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Fix conflicts
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4 years ago |
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Pjotr Prins
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a30e057e39
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README
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4 years ago |
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George Githinji
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59ed27e1b3
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focus on why BioD. this is not just about D.
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4 years ago |
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George Githinji
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e27a224f3e
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correct typo
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4 years ago |
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George Githinji
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792e900304
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updated readme
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4 years ago |
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George Githinji
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fd3b09e867
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updated the decompression.d
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4 years ago |
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George Githinji
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0ed850c59a
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updated std.genotype and created experimental.file
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4 years ago |
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George Githinji
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2d1d207b91
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added new hierachies for std.experimental. Fixed names module imports in the new std.experimental.hts
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4 years ago |
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George Githinji
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0d7f5b11e9
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fix the examples to use the new namespaces
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4 years ago |
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George Githinji
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d8c3067515
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fix namespace imports
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4 years ago |
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George Githinji
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c3c2a81839
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fix the module imports for test
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4 years ago |
