427 Commits (segfaults)
 

Author SHA1 Message Date
Pjotr Prins b7f1db860d Add compareCoordinatesAndStrand to fix sorting test in depth which came 6 years ago
George Githinji c379972f21 Merge remote-tracking branch 'upstream/master' 6 years ago
George Githinji 22d70b1e4a minor formatting 6 years ago
Artem Tarasov cfa7cb3cf3 Merge pull request #23 from John-Colvin/fix_build 6 years ago
John Colvin 468c01931d fix toJSON usage for new and old compilers 6 years ago
John Colvin 3b7464d3b1 test osx build 6 years ago
John Colvin 27cbaadf37 better .travis.yml, uses dub test and tests ldc 6 years ago
John Colvin 0ec8d39d8f fix tabs/spaces in dub.json 6 years ago
John Colvin 05f86b8877 fix toHash signature 6 years ago
John Colvin 4394f15bfd fix deprecations and some warnings 6 years ago
John Colvin 4901cda765 std.c -> core.stdc 6 years ago
John Colvin c37b0e7e03 switch to undead.stream; 6 years ago
Artem Tarasov 1248586b54 fixes lomereiter/sambamba#244 6 years ago
George Githinji 95c8167116 Merge remote-tracking branch 'upstream/master' 6 years ago
George Githinji 1af61448a9 added a fastq parser 6 years ago
Artem Tarasov 47d081e06c use consistent naming (#21) 6 years ago
Artem Tarasov 89664db077 Merge pull request #21 from indraniel/sq-ah-header-tag 6 years ago
indraniel 589d65025a + include the AH header tag to @SQ lines 6 years ago
Artem Tarasov 0b44f2a93e improved big endian support 6 years ago
Artem Tarasov 59d0c2bdb7 travis badge 6 years ago
Artem Tarasov 8a18c41b19 fix travis.yml 6 years ago
Artem Tarasov aea2c02c39 fix licensing confusion 6 years ago
Artem Tarasov 834fd27e9e Merge pull request #20 from wilzbach/add_dub 6 years ago
Sebastian Wilzbach e16843cedd add travis.yml for Continuous Integration 6 years ago
Sebastian Wilzbach cb60c3ec6b Add dub config file 6 years ago
Artem Tarasov ea60623c05 import fix 6 years ago
Artem Tarasov 3e73b672b8 fix initializing new reference in pileup 6 years ago
Artem Tarasov 84fd950575 whitespace fix 6 years ago
Artem Tarasov bf564a9064 lowering memory footprint for huge headers 6 years ago
Artem Tarasov 59cdeb650c minimize MultiBamReader overhead for a single file 6 years ago
Artem Tarasov 6622e8dfac added .ref_name and .mate_ref_name to BamRead 6 years ago
Artem Tarasov faa3cab19e fix 32-bit compilation 6 years ago
Artem Tarasov 7efdb8a2f7 on-the-fly indexing: handle multi-block reads 7 years ago
Artem Tarasov 1eb4a6761e BamWriter: always recalculate the bin of reads 7 years ago
Artem Tarasov e992a27e4a Merge pull request #16 from biorelated/master 7 years ago
biorelated 29b36a225c fix indetation;rename file 7 years ago
biorelated 1f22a2591f fix indentation; rename example file 7 years ago
biorelated 20ddf4ba1f fix indentation; rename to reflect function of the example 7 years ago
biorelated 00b3574da1 rename example3 7 years ago
biorelated ba6172dc49 rename example2 to print_base_info. fix indentation 7 years ago
biorelated 909ba7b05d Merge remote-tracking branch 'upstream/master' 7 years ago
Artem Tarasov 9b5838fe25 fix #12 7 years ago
biorelated 982c4f670f Merge remote-tracking branch 'upstream/master' 7 years ago
Artem Tarasov 842f0ab549 reference access to header records (fixes #14) 7 years ago
Artem Tarasov 0366a254d9 readsWithProgress: ensure finishFunc is called only once 7 years ago
Artem Tarasov f246c5c993 MultiBamReader: added readsWithProgress method 7 years ago
Artem Tarasov 13721d7ca0 throw write errors 7 years ago
Artem Tarasov 57e73f2b31 2.067 fixes 7 years ago
biorelated 1d4ec479ab update with upstream commit to skip unmapped chunks 7 years ago
Artem Tarasov d54f90fb68 fixes for 2.067 frontend 7 years ago