421 Commits (master)
 

Author SHA1 Message Date
lomereiter ae35f201c1 2.062 regression workaround =\ 9 years ago
lomereiter 8b633de229 more const 10 years ago
lomereiter bb870b760a readme 10 years ago
lomereiter 81909e480c unittests pass on 2.061 10 years ago
lomereiter 48675619e2 report range violations in flowcall.d 10 years ago
lomereiter 9a79ba6eee support for ZM tag 10 years ago
lomereiter 5aba31cb42 2.061 is NOT yet supported due to regressions in compiler 10 years ago
lomereiter 534c2f349b fix compilation errors with 2.061 10 years ago
lomereiter 5f591d8786 fix 10 years ago
lomereiter 4758c0595c allow underscore; fix distance calculation 10 years ago
lomereiter 0483604596 store node dictionary; tree distance 10 years ago
lomereiter 0ab08e6dfd store parent node 10 years ago
lomereiter 6fdfe7c049 newick tree parser 10 years ago
lomereiter ab97d012d8 more caching in baseinfo.d 10 years ago
lomereiter 9d7351ea96 revert last commit 10 years ago
lomereiter c4eaadd3d3 simplified code in SequenceResult.opIndex 10 years ago
lomereiter 6262a37581 micro optimizations 10 years ago
lomereiter 7bd9a276a0 added PerBaseInfo.constructFront method 10 years ago
Artem Tarasov 0c32cde7b9 Create README.md 10 years ago
lomereiter 6bbc6f3a04 renamings: next_ref_id -> mate_ref_id, next_pos -> mate_position 10 years ago
lomereiter 61e9ae13c1 split mdExtra into mdCurrentOp, mdNextOp, mdPreviousOp 10 years ago
lomereiter 19d8d6c5cf added alias NucleotideSequence 10 years ago
lomereiter 7847d19753 added Option.mdExtra to basesWith 10 years ago
lomereiter fde3f8232f fixed bio.bam.md.reconstruct.dna 10 years ago
lomereiter aaddb9333c support for options in basesWith 10 years ago
lomereiter 852c1b62e6 fixed unittests by adding opEquals to PerBaseInfo.Result 10 years ago
lomereiter 2933818678 fixes 10 years ago
lomereiter 6dda861117 optional cigar_before/cigar_after in basesWith 10 years ago
lomereiter a9504b2d4d cache MD operation in basesWith iteration 10 years ago
lomereiter b7b1dcfe24 removed unnecessary debug statement 10 years ago
lomereiter 168052e154 added another example on pileup 10 years ago
lomereiter 8907b118ed renamed module pileuprange to pileup 10 years ago
lomereiter a7dd41f09c fix docs 10 years ago
lomereiter 9bcd8285ad updated example of using baseinfo module 10 years ago
lomereiter ec2c9aeb0c basesWith: MD tag 10 years ago
lomereiter 3232ed82ac fix comment 10 years ago
lomereiter a636e10641 . 10 years ago
lomereiter dd5b4a7183 fixes 10 years ago
lomereiter d6fd351a65 example of creating BAM from scratch 10 years ago
lomereiter f4984db147 renames: writeRead -> writeRecord; phred_base_quality -> base_qualities 10 years ago
lomereiter 2fadd7f1ff new BamWriter class; bio.bam.output is deprecated 10 years ago
lomereiter d38d2b17da bgzf input/output streams 10 years ago
lomereiter c83673f747 renamed IChunkInputStream to BgzfInputStream 10 years ago
lomereiter 5f3ba8fd97 . 10 years ago
lomereiter 9218e12a38 moved BGZF-related code to bio.core.bgzf 10 years ago
lomereiter b3f2466d46 fixes; example of iterating several datasets 10 years ago
lomereiter 7781f4aefd less allocations during BAM reading 10 years ago
lomereiter f942aa7f4b license 10 years ago
lomereiter 3b0b17f01c example of working with tags 10 years ago
lomereiter 04ab14fd4f example of getting DNA from MD tags 10 years ago