421 Commits (master)
 

Author SHA1 Message Date
George Githinji a5912cdbd4 move all hight throughput sequencing stuff to hts namespace 4 years ago
George Githinji 74f94c4778 add etc directory 4 years ago
George Githinji 7deab8abd4 backup the old directory and module structure 4 years ago
George Githinji 0570f76f4d added the bio.std.experimental directory. Moved new bio2 to experimental 4 years ago
George Githinji 0bac2ffd5f move fasta and fastq modules to bio.std.file 4 years ago
George Githinji dbfc47339d move decompress.d module to core 4 years ago
George Githinji ae3a9263a4 rearrange directories 4 years ago
Pjotr Prins 2196f29f54 Merge branch 'master' of github.com:biod/BioD 4 years ago
Pjotr Prins baaefefdd0 GzipbyLine: pass line counter 4 years ago
Pjotr Prins 7f5277f3df README build instructions with dub and meson 4 years ago
George Githinji 3627559ded use explicit import messages. comment sections to allow for debugging 4 years ago
Pjotr Prins 25068c1c43 size_t is uint on 32-bits platform. Fixes #43. Thanks @tillea. 4 years ago
Pjotr Prins d2d2ac9b47 Updated dub.json 4 years ago
George Githinji 1828b14d7c Merge branch 'master' of github.com:biod/BioD 4 years ago
Pjotr Prins ac5725a19d GzipbyLineThreaded: multi-threaded vesion uses mmfile 4 years ago
Pjotr Prins fb0aca9912 GzipbyLine: fix last empty line 4 years ago
George Githinji dd48716948 make use of explit module import for learning purposes 4 years ago
Pjotr Prins 84d14e6014 SimpleSplitConv: strtok replacement 4 years ago
Pjotr Prins e3e18530c4 GzipbyLine: implementation 4 years ago
Pjotr Prins 01891fff60 Decompress: add test file 4 years ago
Pjotr Prins c7e2ec0ddd Decompress: started work on GzipbyLine 4 years ago
Pjotr Prins 4f1a7d2fb7
Merge pull request #42 from TimurIs/master 4 years ago
Timur Isaev b96eafa930 adding new comparator for string/bam_read 4 years ago
Timur Isaev 8453e40c27 adding new comparator 4 years ago
Pjotr Prins 332b06114e
Merge pull request #40 from george-githinji/master 4 years ago
George Githinji 1856f72f6b Fixed deprecation warnings by making use std.datetime.stopwatch.StopWatch for running the benchmark 4 years ago
George Githinji da7045e408 cleanup 4 years ago
George Githinji 0e8ed55683 Use std.datetime.stopwatch.StopWatch 4 years ago
Pjotr Prins 33fc2401d6
Merge pull request #39 from george-githinji/master 4 years ago
George Githinji 5d54ecd6f0 Merge branch 'master' of github.com:biod/BioD 4 years ago
George Githinji 5a1e131e44 ignore the dub.selections.json 4 years ago
George Githinji fc7bf3641a removed recursive import 4 years ago
Pjotr Prins 9a23d27d17
Merge pull request #38 from ximion/master 4 years ago
Matthias Klumpp c059165f35 meson: Modernize Meson build definition 4 years ago
Matthias Klumpp ee9428fea0 meson: Include bio2 in libbiod build 4 years ago
Matthias Klumpp 643b454f04 trivial: Fix unittests 4 years ago
Pjotr Prins 0243e7590b Release 0.2.1 4 years ago
Pjotr Prins 2f0634b187 Fix BioD/bio/maf/reader.d(41): Deprecation: struct `std.stdio.File.ByLine!(char, char).ByLine` is deprecated - Use .byLine 4 years ago
Pjotr Prins 87dcc1af5a Fixes https://github.com/biod/BioD/issues/37 4 years ago
Pjotr Prins 92afd2d14a Merge branch 'master' of https://github.com/biod/BioD 4 years ago
Pjotr Prins 11a569f51e Add PM header to be in line with samtools 4 years ago
Pjotr Prins 877283225e Fix link in RELEASE-NOTES 4 years ago
Pjotr Prins df33db0880 -a 4 years ago
Pjotr Prins ff04629e86 Changelog 4 years ago
Pjotr Prins c865ee2de2 Compilation fixes for ldc 1.11 4 years ago
Pjotr Prins dd07f34979 Fixes: 4 years ago
George 3513df92a6
update github account link 4 years ago
Pjotr Prins 8527852a38 README 4 years ago
Pjotr Prins f4a6c1c55c Introducing my recent D-style rewrite of bamreader. This version is still 4 years ago
Pjotr Prins a84bbed78f Merge branch 'master' of github.com:pjotrp/BioD 4 years ago