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renamed module pileuprange to pileup

remotes/georgeg/no_streams
lomereiter 9 years ago
parent
commit
8907b118ed
  1. 2
      bio/bam/pileup.d
  2. 2
      bio/bam/snpcallers/maq.d
  3. 2
      bio/bam/snpcallers/simple.d
  4. 2
      examples/example1.d
  5. 2
      examples/example5.d
  6. 2
      test/unittests.d

2
bio/bam/pileuprange.d → bio/bam/pileup.d

@ -17,7 +17,7 @@
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
module bio.bam.pileuprange;
module bio.bam.pileup;
import bio.bam.read;
import bio.bam.md.reconstruct;

2
bio/bam/snpcallers/maq.d

@ -13,7 +13,7 @@ import std.random;
import std.typecons;
import bio.bam.md.reconstruct;
import bio.bam.pileuprange;
import bio.bam.pileup;
import bio.core.base;
import bio.core.genotype;

2
bio/bam/snpcallers/simple.d

@ -1,6 +1,6 @@
module bio.bam.snpcallers.simple;
import bio.bam.pileuprange;
import bio.bam.pileup;
import bio.core.utils.algo;
import std.algorithm;

2
examples/example1.d

@ -1,7 +1,7 @@
// run example: rdmd -I.. example1.d
import bio.bam.reader;
import bio.bam.pileuprange;
import bio.bam.pileup;
import std.stdio;

2
examples/example5.d

@ -2,7 +2,7 @@
import bio.bam.reader;
import bio.bam.read : compareCoordinates;
import bio.bam.pileuprange;
import bio.bam.pileup;
import std.algorithm, std.conv, std.stdio;

2
test/unittests.d

@ -24,7 +24,7 @@ import bio.core.bgzf.blockrange;
import bio.bam.reader;
import bio.bam.writer;
import bio.bam.md.reconstruct;
import bio.bam.pileuprange;
import bio.bam.pileup;
import bio.bam.baseinfo;
import bio.bam.validation.samheader;
import bio.bam.validation.alignment;

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