/*
 Genome-wide Efficient Mixed Model Association (GEMMA)
 Copyright (C) 2011-2017, Xiang Zhou

 This program is free software: you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation, either version 3 of the License, or
 (at your option) any later version.

 This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.

 You should have received a copy of the GNU General Public License
 along with this program. If not, see <http://www.gnu.org/licenses/>.
*/

#include <fstream>
#include <iostream>
#include <sstream>

#include <algorithm>
#include <cmath>
#include <cstring>
#include <ctime>
#include <iomanip>
#include <iostream>
#include <stdio.h>
#include <stdlib.h>

#include "gsl/gsl_blas.h"
#include "gsl/gsl_cdf.h"
#include "gsl/gsl_eigen.h"
#include "gsl/gsl_linalg.h"
#include "gsl/gsl_matrix.h"
#include "gsl/gsl_randist.h"
#include "gsl/gsl_roots.h"
#include "gsl/gsl_vector.h"

#include "lapack.h"
#include "ldr.h"
#include "lm.h"
#include "mathfunc.h"
#include "param.h"

using namespace std;

void LDR::CopyFromParam(PARAM &cPar) {
  a_mode = cPar.a_mode;
  d_pace = cPar.d_pace;

  file_bfile = cPar.file_bfile;
  file_geno = cPar.file_geno;
  file_out = cPar.file_out;
  path_out = cPar.path_out;

  ni_total = cPar.ni_total;
  ns_total = cPar.ns_total;
  ni_test = cPar.ni_test;
  ns_test = cPar.ns_test;
  n_cvt = cPar.n_cvt;

  indicator_idv = cPar.indicator_idv;
  indicator_snp = cPar.indicator_snp;
  snpInfo = cPar.snpInfo;

  return;
}


void LDR::CopyToParam(PARAM &cPar) { return; }