#ifndef __DEBUG_H__ #define __DEBUG_H__ #include #include #include "gsl/gsl_matrix.h" void gemma_gsl_error_handler (const char * reason, const char * file, int line, int gsl_errno); void debug_set_debug_mode(bool setting); void debug_set_no_check_mode(bool setting); void debug_set_strict_mode(bool setting); void debug_set_quiet_mode(bool setting); void debug_set_issue(uint issue); void debug_set_legacy_mode(bool setting); bool is_debug_mode(); bool is_no_check_mode(); bool is_check_mode(); bool is_strict_mode(); bool is_quiet_mode(); bool is_issue(uint issue); bool is_legacy_mode(); #define check_int_mult_overflow(m,n) \ { auto x = m * n; \ enforce_msg(x / m == n, "multiply integer overflow"); } gsl_matrix *gsl_matrix_safe_alloc(size_t rows,size_t cols); int gsl_matrix_safe_memcpy (gsl_matrix *dest, const gsl_matrix *src); void gsl_matrix_safe_free (gsl_matrix *v); void do_gsl_matrix_safe_free (gsl_matrix *m, const char *__pretty_function, const char *__file, int __line); gsl_vector *gsl_vector_safe_alloc(size_t n); int gsl_vector_safe_memcpy (gsl_vector *dest, const gsl_vector *src); void gsl_vector_safe_free (gsl_vector *v); void do_gsl_vector_safe_free (gsl_vector *v, const char *__pretty_function, const char *__file, int __line); char *do_strtok_safe(char *tokenize, const char *delimiters, const char *__pretty_function, const char *__file, int __line); #define strtok_safe(string,delimiters) do_strtok_safe(string,delimiters,__PRETTY_FUNCTION__,__FILE__,__LINE__) // Validation routines void do_validate_K(const gsl_matrix *K, const char*__pretty_func, const char *__file, int __line); #define ROUND(f) round(f * 10000.)/10000 #define validate_K(K) do_validate_K(K,__PRETTY_FUNCTION__,__FILE__,__LINE__) #define warning_at_msg(__file,__line,msg) cerr << "**** WARNING: " << msg << " in " << __file << " at line " << __line << endl; inline void warnfail_at_msg(bool strict, const char *__function, const char *__file, int __line, const char *msg) { if (strict) std::cerr << "**** STRICT FAIL: "; else std::cerr << "**** WARNING: "; std::cerr << msg << " in " << __file << " at line " << __line << " in " << __function << std::endl; if (strict) exit(1); } inline void fail_at_msg(const char *__file, int __line, std::string msg) { std::cerr << msg << " in " << __file << " at line " << __line << std::endl; exit(1); } # ifndef __ASSERT_VOID_CAST # define __ASSERT_VOID_CAST (void) # endif inline void fail_msg(const char *msg) { std::cerr << "**** FAILED: " << msg << std::endl; exit(5); } inline void fail_msg(std::string msg) { std::cerr << "**** FAILED: " << msg << std::endl; exit(5); } #if defined NDEBUG #define warning_msg(msg) cerr << "**** WARNING: " << msg << endl; #define debug_msg(msg) #define assert_issue(is_issue, expr) #else // DEBUG #define warning_msg(msg) cerr << "**** WARNING: " << msg << " in " << __FILE__ << " at line " << __LINE__ << " in " << __FUNCTION__ << endl; #define debug_msg(msg) (is_debug_mode() && cerr << "**** DEBUG: " << msg << " in " << __FILE__ << " at line " << __LINE__ << " in " << __FUNCTION__ << endl); #define assert_issue(is_issue, expr) \ ((is_issue) ? enforce_msg(expr,"FAIL: ISSUE assert") : __ASSERT_VOID_CAST(0)) #endif // NDEBUG // enforce works like assert but also when NDEBUG is set (i.e., it // always works). enforce_msg prints message instead of expr /* This prints an "Assertion failed" message and aborts. */ inline void __enforce_fail(const char *__assertion, const char *__file, unsigned int __line, const char *__function) { std::cout << "ERROR: Enforce failed for " << __assertion << " in " << __file << " at line " << __line << " in " << __PRETTY_FUNCTION__ << std::endl; exit(1); } #define __ASSERT_FUNCTION __PRETTY_FUNCTION__ #define enforce(expr) \ ((expr) \ ? __ASSERT_VOID_CAST(0) \ : __enforce_fail(__STRING(expr), __FILE__, __LINE__, __ASSERT_FUNCTION)) #define enforce_msg(expr, msg) \ ((expr) ? __ASSERT_VOID_CAST(0) \ : __enforce_fail(msg, __FILE__, __LINE__, __ASSERT_FUNCTION)) #define enforce_str(expr, msg) \ ((expr) \ ? __ASSERT_VOID_CAST(0) \ : __enforce_fail((msg).c_str(), __FILE__, __LINE__, __ASSERT_FUNCTION)) // Helpers to create a unique varname per MACRO #define COMBINE1(X, Y) X##Y #define COMBINE(X, Y) COMBINE1(X, Y) #define enforce_gsl(expr) \ auto COMBINE(res, __LINE__) = (expr); \ (COMBINE(res, __LINE__) == 0 \ ? __ASSERT_VOID_CAST(0) \ : __enforce_fail(gsl_strerror(COMBINE(res, __LINE__)), __FILE__, \ __LINE__, __ASSERT_FUNCTION)) #define enforce_fexists(fn, msg) \ if (!fn.empty()) \ enforce_msg(stat(fn.c_str(), &fileInfo) == 0, \ ((std::string(__STRING(fn)) + " " + fn + ": " + msg).c_str())); #define gsl_matrix_safe_free(m) \ do_gsl_matrix_safe_free(m,__ASSERT_FUNCTION,__FILE__,__LINE__); #define gsl_vector_safe_free(v) \ do_gsl_vector_safe_free(v,__ASSERT_FUNCTION,__FILE__,__LINE__); #endif