From bda453acb2aa202a0703e8863fead0f2289c0192 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 25 Aug 2021 09:54:44 +0200
Subject: More tests and some flexibility with testing floats

---
 test/dev_tests.rb | 25 ++++++++++++++++++++++++-
 1 file changed, 24 insertions(+), 1 deletion(-)

(limited to 'test/dev_tests.rb')

diff --git a/test/dev_tests.rb b/test/dev_tests.rb
index d63b8fe..fb3fecf 100644
--- a/test/dev_tests.rb
+++ b/test/dev_tests.rb
@@ -38,6 +38,29 @@ class TestQuick < MiniTest::Test
            -lmm 2 -no-check -maf 0.1 \
            -o BXDLMM")
 
-    expect("output/BXDLMM.assoc.txt",[[2,9,"1.234747e-01"]])
+    expect("output/BXDLMM.assoc.txt",[[2,9,"1.234747e-01"],
+                                      [:max,9,"9.997119e-01"]])
+  end
+
+  def test_mouse_hs1940_loco
+    assert gemma("-g ./example/mouse_hs1940.geno.txt.gz \
+           -p ./example/mouse_hs1940.pheno.txt \
+           -a ./example/mouse_hs1940.anno.txt \
+           -snps ./example/mouse_hs1940_snps.txt \
+           -nind 400 -loco 1 -gk \
+           -o mouse_hs1940_loco")
+
+    assert gemma("-g ./example/mouse_hs1940.geno.txt.gz \
+           -p ./example/mouse_hs1940.pheno.txt \
+	   -n 1 \
+	   -loco 1 \
+           -a ./example/mouse_hs1940.anno.txt \
+           -k ./output/mouse_hs1940_loco.cXX.txt \
+	   -snps ./example/mouse_hs1940_snps.txt \
+           -lmm \
+	   -nind 400 -no-check \
+           -o mouse_hs1940_loco")
+    expect("output/mouse_hs1940_loco.assoc.txt",[[2,9,"-3.073643e+02"],
+                                                 [:max,11,"9.716047e-01"]])
   end
 end
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