From 3935ba39d30666dd7d4a831155631847c77b70c4 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 2 Aug 2017 08:46:58 +0000
Subject: Massive patch using LLVM coding style. It was generated with:

  clang-format -style=LLVM -i *.cpp *.h

Please set your editor to replace tabs with spaces and use indentation of 2 spaces.
---
 src/varcov.h | 60 +++++++++++++++++++++++++++++-------------------------------
 1 file changed, 29 insertions(+), 31 deletions(-)

(limited to 'src/varcov.h')

diff --git a/src/varcov.h b/src/varcov.h
index 4a1eb3a..47b4f9d 100644
--- a/src/varcov.h
+++ b/src/varcov.h
@@ -19,45 +19,43 @@
 #ifndef __VARCOV_H__
 #define __VARCOV_H__
 
-#include "gsl/gsl_vector.h"
 #include "gsl/gsl_matrix.h"
-#include "param.h"
+#include "gsl/gsl_vector.h"
 #include "io.h"
+#include "param.h"
 
 using namespace std;
 
 class VARCOV {
 
 public:
-	// IO-related parameters.
-	string file_out;
-	string path_out;
-	string file_geno;
-	string file_bfile;
-	int d_pace;
-
-	vector<int> indicator_idv;
-	vector<int> indicator_snp;
-
-	vector<SNPINFO> snpInfo;
-
-	double time_opt;
-
-	// Class-specific parameters.
-	double window_cm;
-	size_t window_bp;
-	size_t window_ns;
-
-	// Main functions.
-	void CopyFromParam (PARAM &cPar);
-	void CopyToParam (PARAM &cPar);
-	void CalcNB (vector<SNPINFO> &snpInfo_sort);
-	void WriteCov (const int flag, const vector<SNPINFO> &snpInfo_sub,
-		       const vector<vector<double> > &Cov_mat);
-	void AnalyzeBimbam ();
-	void AnalyzePlink ();
+  // IO-related parameters.
+  string file_out;
+  string path_out;
+  string file_geno;
+  string file_bfile;
+  int d_pace;
+
+  vector<int> indicator_idv;
+  vector<int> indicator_snp;
+
+  vector<SNPINFO> snpInfo;
+
+  double time_opt;
+
+  // Class-specific parameters.
+  double window_cm;
+  size_t window_bp;
+  size_t window_ns;
+
+  // Main functions.
+  void CopyFromParam(PARAM &cPar);
+  void CopyToParam(PARAM &cPar);
+  void CalcNB(vector<SNPINFO> &snpInfo_sort);
+  void WriteCov(const int flag, const vector<SNPINFO> &snpInfo_sub,
+                const vector<vector<double>> &Cov_mat);
+  void AnalyzeBimbam();
+  void AnalyzePlink();
 };
 
 #endif
-
-
-- 
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