From c5da663c56e31d1beb42972665947a5aa5b35cfe Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Thu, 27 Nov 2025 09:36:16 +0100
Subject: Minor tweaks

---
 src/lmm.cpp | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'src/lmm.cpp')

diff --git a/src/lmm.cpp b/src/lmm.cpp
index 1ef3990..12e4edb 100644
--- a/src/lmm.cpp
+++ b/src/lmm.cpp
@@ -96,7 +96,7 @@ void LMM::CopyToParam(PARAM &cPar) {
   cPar.time_UtX = time_UtX;
   cPar.time_opt = time_opt;
 
-  cPar.ng_test = ng_test;
+  cPar.ng_test = ng_test; // number of markers tested
 
   return;
 }
@@ -1723,7 +1723,6 @@ void LMM::Analyze(std::function< SnpNameValues(size_t) >& fetch_snp,
 
     gsl_matrix_set_zero(Xlarge);
     for (size_t i = 0; i < l; i++) {
-      ProgressBar("GWA compute   ", i, l - 1);
       // for each snp batch item extract transformed genotype:
       gsl_vector_view UtXlarge_col = gsl_matrix_column(UtXlarge, i);
       gsl_vector_safe_memcpy(Utx, &UtXlarge_col.vector);
@@ -1851,7 +1850,7 @@ void LMM::Analyze(std::function< SnpNameValues(size_t) >& fetch_snp,
   }
 
   batch_compute(c % msize);
-  ProgressBar("Computed      ", num_snps - 1, num_snps - 1);
+  ProgressBar("Reading SNPS", num_snps - 1, num_snps - 1);
   // cout << "Counted SNPs " << c << " sumStat " << sumStat.size() << endl;
   cout << endl;
   checkpoint_nofile("end-lmm-analyze");
-- 
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