From 4ca7fb55f0aaa1773626a69b48f3ed88e5b7f5a1 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sat, 6 Dec 2025 12:10:50 +0100
Subject: Adding loco support for mdb

---
 src/lmm.cpp | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

(limited to 'src/lmm.cpp')

diff --git a/src/lmm.cpp b/src/lmm.cpp
index 375013c..7a80b8a 100644
--- a/src/lmm.cpp
+++ b/src/lmm.cpp
@@ -2155,8 +2155,10 @@ void LMM::mdb_analyze(std::function< SnpNameValues2(size_t) >& fetch_snp,
 
 void LMM::mdb_calc_gwa(const gsl_matrix *U, const gsl_vector *eval,
                           const gsl_matrix *UtW, const gsl_vector *Uty,
-                          const gsl_matrix *W, const gsl_vector *y) {
+                       const gsl_matrix *W, const gsl_vector *y, const string loco) {
   checkpoint("mdb-calc-gwa",file_geno);
+  bool is_loco = !loco.empty();
+  cout << loco << " CHR!!!!" << endl;
 
   // const auto num_snps = indicator_snp.size();
   // enforce_msg(num_snps > 0,"Zero SNPs to process - data corrupt?");
-- 
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