From 6abb0ce062f27e15a4168fca80939bc7600d781d Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Thu, 27 Nov 2025 10:45:42 +0100
Subject: Changing namings to bimbam to make clearer

---
 src/gemma_io.cpp | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

(limited to 'src/gemma_io.cpp')

diff --git a/src/gemma_io.cpp b/src/gemma_io.cpp
index b1bc368..6d33e00 100644
--- a/src/gemma_io.cpp
+++ b/src/gemma_io.cpp
@@ -688,14 +688,14 @@ bool ReadFile_fam(const string &file_fam, vector<vector<int>> &indicator_pheno,
 The function returns a `bool` indicating success/failure, but the real outputs are these three modified reference parameters.
 */
 
-bool ReadFile_geno(const string &file_geno, const set<string> &setSnps,
-                   const gsl_matrix *W, const vector<int> &indicator_idv,
-                   vector<int> &indicator_snp, const double &maf_level,
-                   const double &miss_level, const double &hwe_level,
-                   const double &r2_level, map<string, string> &mapRS2chr,
-                   map<string, long int> &mapRS2bp,
-                   map<string, double> &mapRS2cM, vector<SNPINFO> &snpInfo,
-                   size_t &ns_test) {
+bool ReadFile_bimbam_geno(const string &file_geno, const set<string> &setSnps,
+                          const gsl_matrix *W, const vector<int> &indicator_idv,
+                          vector<int> &indicator_snp, const double &maf_level,
+                          const double &miss_level, const double &hwe_level,
+                          const double &r2_level, map<string, string> &mapRS2chr,
+                          map<string, long int> &mapRS2bp,
+                          map<string, double> &mapRS2cM, vector<SNPINFO> &snpInfo,
+                          size_t &ns_test) {
   checkpoint("read-file-geno",file_geno);
   debug_msg("entered");
   indicator_snp.clear();
-- 
cgit 1.4.1