From 831afe5d67d62b1a1c2be613e78e1c704634621d Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sat, 6 Dec 2025 11:59:14 +0100
Subject: For LOCO we wont use gwassnps

---
 src/gemma.cpp | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

(limited to 'src/gemma.cpp')

diff --git a/src/gemma.cpp b/src/gemma.cpp
index 3100b94..94d61a8 100644
--- a/src/gemma.cpp
+++ b/src/gemma.cpp
@@ -2843,8 +2843,7 @@ void GEMMA::BatchRun(PARAM &cPar) {
           write(&Y_col.vector, "Y_col");
 
           if (cPar.is_mdb) {
-            cLmm.mdb_calc_gwa(U, eval, UtW, &UtY_col.vector, W,
-                              &Y_col.vector, cPar.setGWASnps);
+            cLmm.mdb_calc_gwa(U, eval, UtW, &UtY_col.vector, W, &Y_col.vector);
             cLmm.CopyToParam(cPar);
           }
           else {
-- 
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