From c65902a4e062689f03bb22e3b2d2526cf887750d Mon Sep 17 00:00:00 2001 From: xiangzhou Date: Sat, 11 Jul 2015 13:05:26 -0400 Subject: add GXE test --- src/eigenlib.h | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 src/eigenlib.h (limited to 'src/eigenlib.h') diff --git a/src/eigenlib.h b/src/eigenlib.h new file mode 100644 index 0000000..e9768c2 --- /dev/null +++ b/src/eigenlib.h @@ -0,0 +1,34 @@ +/* + Genome-wide Efficient Mixed Model Association (GEMMA) + Copyright (C) 2011 Xiang Zhou + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . +*/ + +#ifndef __EIGENLIB_H__ +#define __EIGENLIB_H__ + +#include + +using namespace std; + + +void eigenlib_dgemm (const char *TransA, const char *TransB, const double alpha, const gsl_matrix *A, const gsl_matrix *B, const double beta, gsl_matrix *C); +void eigenlib_dgemv (const char *TransA, const double alpha, const gsl_matrix *A, const gsl_vector *x, const double beta, gsl_vector *y); +void eigenlib_invert(gsl_matrix *A); +void eigenlib_dsyr (const double alpha, const gsl_vector *b, gsl_matrix *A); +void eigenlib_eigensymm (const gsl_matrix *G, gsl_matrix *U, gsl_vector *eval); + + +#endif -- cgit v1.2.3